PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010535475.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

GRAS

Protein Properties

Length: 553aa MW: 63482 Da PI: 5.1898

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010535475.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	55.3	1.3e-17	230	299	2	70
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsets 70 ++lL++cA+av+s d++ a++ L++++ ++s +gd ++Rla+yf+eAL++r+a+ ++++l+++lp+s+ts XP_010535475.1 230 QSLLMQCAQAVASFDHRTATEKLKEIRSHSSRYGDGTRRLAFYFAEALESRIAGtQSPQLFSKLPSSRTS 299 789*************************************************89999999999887 PP
2	GRAS	244.3	4.9e-75	310	549	136	374
GRAS 136 pegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevL 228 p+gpp lRiTg++ p++g +e++eetg+rL++f+++++vpfe+n+ +ak++e+++++eL + ++E+++Vn+v++l +++de+vs++s+rd L XP_010535475.1 310 PGGPPVLRITGIEMPQPGyrPSERVEETGRRLKRFCDKFNVPFEYNF-IAKKWETISPDELVITKEETTVVNCVYRLRYVPDETVSMNSPRDIAL 403 799************999***********************.7****************************************** PP GRAS 229 klvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323 kl+++++P+++v++e + +ns+ F++rf eal ++s+lfd +ea+ +e+e+r+ vEre++ r+++nv+acegaer+er et+++W+ r ++a XP_010535475.1 404 KLFRDINPDLFVFAEVNGMYNSPFFVTRFREALFHFSSLFDIFEATTQEENEHRTLVEREIFVRDAMNVIACEGAERIERPETYKQWQVRASRAR 498 ******************************************************************************************* PP GRAS 324 FkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 F+pv+l+++++k+ak ++r+ + + + ++ +++++++gWk+r L+++S+W+ XP_010535475.1 499 FRPVELNKEIMKEAKEMVRTGYHKDFVIDTDRHWMFQGWKGRVLYALSCWK 549 ****************99888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	36.784	136	529	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.5E-15	230	299	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-72	310	549	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence Send to blast
MDALLQVSVD GFRLEESGPC CKPRNPQETG NDSFMCFRKP ESQNPSFDNS AAGSDDFVVL 60 KYINDMLMEE DLEGQSCMLQ DSLALQAAER SFYEALHDQS SPSDQNSNDQ SHDFAGNFTT 120 PSGLHQPTLA FTDSPENADS AYILYGESQR RYRPRDDDDL ENGRTIKQPA ISSEIELSEK 180 FEELLLSCTG NNQETSPNSQ ANHNHENRTR RAKGSSYRSL TQNPESVDLQ SLLMQCAQAV 240 ASFDHRTATE KLKEIRSHSS RYGDGTRRLA FYFAEALESR IAGTQSPQLF SKLPSSRTSI 300 VDILKGYKLP GGPPVLRITG IEMPQPGYRP SERVEETGRR LKRFCDKFNV PFEYNFIAKK 360 WETISPDELV ITKEETTVVN CVYRLRYVPD ETVSMNSPRD IALKLFRDIN PDLFVFAEVN 420 GMYNSPFFVT RFREALFHFS SLFDIFEATT QEENEHRTLV EREIFVRDAM NVIACEGAER 480 IERPETYKQW QVRASRARFR PVELNKEIMK EAKEMVRTGY HKDFVIDTDR HWMFQGWKGR 540 VLYALSCWKP AEK

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence Send to blast

MDALLQVSVD GFRLEESGPC CKPRNPQETG NDSFMCFRKP ESQNPSFDNS AAGSDDFVVL  60
KYINDMLMEE DLEGQSCMLQ DSLALQAAER SFYEALHDQS SPSDQNSNDQ SHDFAGNFTT  120
PSGLHQPTLA FTDSPENADS AYILYGESQR RYRPRDDDDL ENGRTIKQPA ISSEIELSEK  180
FEELLLSCTG NNQETSPNSQ ANHNHENRTR RAKGSSYRSL TQNPESVDLQ SLLMQCAQAV  240
ASFDHRTATE KLKEIRSHSS RYGDGTRRLA FYFAEALESR IAGTQSPQLF SKLPSSRTSI  300
VDILKGYKLP GGPPVLRITG IEMPQPGYRP SERVEETGRR LKRFCDKFNV PFEYNFIAKK  360
WETISPDELV ITKEETTVVN CVYRLRYVPD ETVSMNSPRD IALKLFRDIN PDLFVFAEVN  420
GMYNSPFFVT RFREALFHFS SLFDIFEATT QEENEHRTLV EREIFVRDAM NVIACEGAER  480
IERPETYKQW QVRASRARFR PVELNKEIMK EAKEMVRTGY HKDFVIDTDR HWMFQGWKGR  540
VLYALSCWKP AEK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-26	222	550	12	380	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010535475.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010535475.1	0.0	PREDICTED: scarecrow-like protein 30
Swissprot	Q9LTI5	0.0	SCL11_ARATH; Scarecrow-like protein 11
TrEMBL	E4MW14	0.0	E4MW14_EUTHA; mRNA, clone: RTFL01-05-F16
TrEMBL	V4MXT7	0.0	V4MXT7_EUTSA; Uncharacterized protein
STRING	XP_010535475.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3646	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59450.1	0.0	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]