PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010535372.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 607aa    MW: 66579.8 Da    PI: 6.8923
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010535372.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-08248268526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C++Gd+C +aHg
  XP_010535372.1 248 PCPEFRK-GSCSRGDSCEYAHG 268
                     8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127966.6E-952124IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.44E-1454134IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.6E-1456132IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00355686IPR002110Ankyrin repeat
PROSITE profilePS5029714.45156132IPR020683Ankyrin repeat-containing domain
CDDcd002042.05E-1458134No hitNo description
PROSITE profilePS500889.80591126IPR002110Ankyrin repeat
SMARTSM002482.0E-491123IPR002110Ankyrin repeat
SMARTSM003562.5E-5243269IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4247270IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619248270IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-6248268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4276306IPR000571Zinc finger, CCCH-type
SMARTSM0035635278301IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.456278302IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MGEEPSHLKS PVLLELSACN DLSGFVSLLE QEGLHNIERS SLWYGRRIGS RKMGFEERTP  60
LMIAALFGSK EIVAYIIRSG RVDVNRSCGS DGATALHCAV AGFSSNSPEV VNLLLKACAD  120
PNSYDANGYK PVDVIFPSLS PVFSLRKKIL ERLLNGDHDL IELEDLQEQR EASVSSPRPS  180
EKKEYPVDPT LPDIKNGIYG TDEFRMYAFK IKPCSRAYSH DWTECPFVHP GENARRRDPR  240
KYHYSCVPCP EFRKGSCSRG DSCEYAHGIF ECWLHPAQYR TRLCKDEMNC TRRVCFFAHK  300
PEELRPLYPS TGSGLPSPRS SFSSCNSSSS FDIGPISPLG LGSLTTPPLS PNSVSSPISG  360
KTWMNWPTNI PPTLYLPGSR LKSTISAREI DFTDDIPGLS SPTGWKPTPV SSASSFSGDI  420
IAKSLNKLAG GINQTSLNDM FGPDDSSGLQ IRRNAINSHM HSSYTTSNSL ASSPIGAKSS  480
FPMDSPTVMT SRAAAFAKKS QSFVERSNGQ SRHSAISSVT SSTCMDDWGS PDGKLDWGVH  540
GDELHKFRRS ASFGFRVGGG TRQLVEPVGL DEPDVSWVDP LVKEPSETRL GSVWTEQSFM  600
EAEQTVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010535372.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010535371.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLD7MQF90.0D7MQF9_ARALL; Zinc finger (CCCH-type) family protein
STRINGXP_010535371.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein