PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010535371.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 639aa    MW: 70164.7 Da    PI: 6.7761
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010535371.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-08280300526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C++Gd+C +aHg
  XP_010535371.1 280 PCPEFRK-GSCSRGDSCEYAHG 300
                     8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127967.1E-984156IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.6E-1486166IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.0E-1488164IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.45188164IPR020683Ankyrin repeat-containing domain
SMARTSM002480.003588118IPR002110Ankyrin repeat
CDDcd002042.26E-1490166No hitNo description
SMARTSM002482.0E-4123155IPR002110Ankyrin repeat
PROSITE profilePS500889.805123158IPR002110Ankyrin repeat
SMARTSM003562.5E-5275301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4279302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619280302IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-6280300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4308338IPR000571Zinc finger, CCCH-type
SMARTSM0035635310333IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.456310334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MRESYQLYDS GDSYLRLSVA GEGKFREGLG FAMGEEPSHL KSPVLLELSA CNDLSGFVSL  60
LEQEGLHNIE RSSLWYGRRI GSRKMGFEER TPLMIAALFG SKEIVAYIIR SGRVDVNRSC  120
GSDGATALHC AVAGFSSNSP EVVNLLLKAC ADPNSYDANG YKPVDVIFPS LSPVFSLRKK  180
ILERLLNGDH DLIELEDLQE QREASVSSPR PSEKKEYPVD PTLPDIKNGI YGTDEFRMYA  240
FKIKPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGSCS RGDSCEYAHG  300
IFECWLHPAQ YRTRLCKDEM NCTRRVCFFA HKPEELRPLY PSTGSGLPSP RSSFSSCNSS  360
SSFDIGPISP LGLGSLTTPP LSPNSVSSPI SGKTWMNWPT NIPPTLYLPG SRLKSTISAR  420
EIDFTDDIPG LSSPTGWKPT PVSSASSFSG DIIAKSLNKL AGGINQTSLN DMFGPDDSSG  480
LQIRRNAINS HMHSSYTTSN SLASSPIGAK SSFPMDSPTV MTSRAAAFAK KSQSFVERSN  540
GQSRHSAISS VTSSTCMDDW GSPDGKLDWG VHGDELHKFR RSASFGFRVG GGTRQLVEPV  600
GLDEPDVSWV DPLVKEPSET RLGSVWTEQS FMEAEQTVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010535371.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010535371.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLD7MQF90.0D7MQF9_ARALL; Zinc finger (CCCH-type) family protein
STRINGXP_010535371.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein