PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010535311.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bZIP
Protein Properties Length: 329aa    MW: 35718 Da    PI: 5.4027
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010535311.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1482.7e-15251307459
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevakl 59 
                      +r++r++kNRe+A rsR+RK+a++ eLe  +++Le+eN++L ++++e+ k+ ++kl
  XP_010535311.1 251 AQRQKRMIKNRESAARSRERKQAYQVELESLAAKLEEENEQLwREKAERTKERYKKL 307
                     78****************************************778889999888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-11248312IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.657250302IPR004827Basic-leucine zipper domain
PfamPF001704.1E-14250307IPR004827Basic-leucine zipper domain
CDDcd147073.58E-18252298No hitNo description
SuperFamilySSF579595.34E-9252303No hitNo description
Gene3DG3DSA:1.20.5.1701.0E-11253307No hitNo description
PROSITE patternPS000360255270IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MASFKVMPSS NSRNSDLSRR NSSSASSSPT IRSHQLKQDS SADRSRISGG YGGLNDRFGS  60
SMKVDGILRD AYGADPPSSS SVAAAAESTL LDASISLFDD PAPVPVEMAV NVDRSGGGGS  120
DGAMSAAETL GKSVDDVWRE IVSGEKKEMK EETQEDIMTL EDFLAKAAVD DAVGTTESED  180
MDVKIPPERL GGGVYAFDSA PLTPFQMIDK VEGSIVGFGN GLDVYGGGGG RGGARGKRAR  240
MIMEPLDKVA AQRQKRMIKN RESAARSRER KQAYQVELES LAAKLEEENE QLWREKAERT  300
KERYKKLMEM AIPVVRKPPV LRRVRSSEW
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010535311.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010535311.10.0PREDICTED: G-box-binding factor 4-like
SwissprotP427779e-74GBF4_ARATH; G-box-binding factor 4
TrEMBLE4MY821e-111E4MY82_EUTHA; mRNA, clone: RTFL01-45-A18
TrEMBLV4LQ581e-111V4LQ58_EUTSA; Uncharacterized protein
STRINGXP_010535311.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.14e-61bZIP family protein