PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010535225.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 484aa    MW: 53075.8 Da    PI: 6.9521
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010535225.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1054.1e-33313371159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnh+
  XP_010535225.1 313 LDDGYRWRKYGQKIVKGNPNPRSYYKCTTPGCNVRKHVERASQDIKSVITTYEGKHNHD 371
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-36298373IPR003657WRKY domain
SuperFamilySSF1182909.94E-29305373IPR003657WRKY domain
PROSITE profilePS5081138.021308373IPR003657WRKY domain
SMARTSM007742.0E-37313372IPR003657WRKY domain
PfamPF031063.0E-25314371IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MDELGEWSPS SPSPRTLLFT KDGVEVKESS ENVQKLDHVG IDEQRSRARR REGNLSERIA  60
ARTGGFSAPR LNTDNIVRRP FGCFMNSGPS TVPSPYIIIS PGFSPTFLLQ SPVMLSNPLV  120
HLSPPATGNG SKSLFKETVG ENNVDLSSSF AMSAQETKTN IEASWSINKN PGADNVNDHT  180
LRASINNPQT QDTDMCSSED KMRGNNDKAV VDEGEDCSSS ESMKAQFDPA DSPLLISNEA  240
EDDDDDDHGD DDDDHADHGG SYNRTVHGSE GEEVNSSKPK KRKQLELSSM IGATRAARRP  300
RIIVQTTSDV DVLDDGYRWR KYGQKIVKGN PNPRSYYKCT TPGCNVRKHV ERASQDIKSV  360
ITTYEGKHNH DVPPPRTCGR PGSTGRFGLV RPPAQSQSTR PSPLSQLGMR YQQPGYLGMR  420
QTSLANLYIT GLSKLPHLPT NRSSVFTLSK VEPAVASLNF SNGSSVYQEI MNRLSLGNRP  480
LHAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-38304373877Probable WRKY transcription factor 4
2lex_A4e-38304373877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010535225.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010535225.10.0PREDICTED: probable WRKY transcription factor 10
TrEMBLA0A200Q1682e-58A0A200Q168_9MAGN; DNA-binding WRKY
STRINGXP_010535225.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79542740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.12e-51WRKY DNA-binding protein 2