PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010535200.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 361aa MW: 40298.1 Da PI: 6.6221

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010535200.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.2	1.2e-07	266	306	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR++i +++ L++l+P +K++ a++L +A +Y+k L XP_010535200.1 266 ARHRREKISERIRVLQRLVPGG-----TKMDTASMLDEAANYLKFL 306 599***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.021	257	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-13	262	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.19E-9	263	311	No hit	No description
SMART	SM00353	1.0E-12	263	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.0E-12	265	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.5E-5	267	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MFDSTRGSKS IQHQESCLDS ICGSQNLKPR SDLSWGGELI TPELCSSQLM NPNLSSFMPD 60 LGAMRAVQQH QHVKNSCSVD QSLDCLWSAS NSNNISTSAE DDDISVLFSD CQMLWSFGGI 120 SFAESENREI TETFSLVSSD QTNPKSGKRN RDDETGSYFR LVRPQEDSIS RDTGDFKLIY 180 DENPSKSKKP RSEKPPCSSN ISFQQPNSNS TSLSGDIEPD AEAIAHMKEM IYRAAAFRPV 240 NFGLEIVERP KRKNVKISTD PQTVAARHRR EKISERIRVL QRLVPGGTKM DTASMLDEAA 300 NYLKFLRAQV KALENMGPKL DPSILSSCSS SPSSFSFPLF HQASMYLPMQ NTNYQVHNPR 360 S

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MFDSTRGSKS IQHQESCLDS ICGSQNLKPR SDLSWGGELI TPELCSSQLM NPNLSSFMPD  60
LGAMRAVQQH QHVKNSCSVD QSLDCLWSAS NSNNISTSAE DDDISVLFSD CQMLWSFGGI  120
SFAESENREI TETFSLVSSD QTNPKSGKRN RDDETGSYFR LVRPQEDSIS RDTGDFKLIY  180
DENPSKSKKP RSEKPPCSSN ISFQQPNSNS TSLSGDIEPD AEAIAHMKEM IYRAAAFRPV  240
NFGLEIVERP KRKNVKISTD PQTVAARHRR EKISERIRVL QRLVPGGTKM DTASMLDEAA  300
NYLKFLRAQV KALENMGPKL DPSILSSCSS SPSSFSFPLF HQASMYLPMQ NTNYQVHNPR  360
S

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010535200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010535200.1	0.0	PREDICTED: transcription factor bHLH87
Swissprot	Q8S3D2	1e-138	BH087_ARATH; Transcription factor bHLH87
TrEMBL	D7L0R6	1e-138	D7L0R6_ARALL; Basic helix-loop-helix family protein
STRING	XP_010535200.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7960	26	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	1e-119	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]