PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 450aa MW: 49850.3 Da PI: 6.8381

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010534785.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.5	3.1e-33	240	294	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHerFv+av++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl XP_010534785.1 240 KPRMRWTPELHERFVQAVHSLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 294 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.424	237	297	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.1E-32	238	295	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.73E-18	238	294	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.1E-25	240	295	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-10	242	293	IPR001005	SANT/Myb domain
Pfam	PF14379	5.8E-23	330	377	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MNSHSLVSGT ADEGGVGQDC SSSISLVHNF LNFPPETRKA PSPFIRSQSP DSASHDHHPW 60 MKHGSKSTFS RSSSFCTNLY LSSSSSSETR KHLGNSLLPF LPNPSTYNQT ASAVESAKSP 120 AIFSEDIVTV TPPYNGGGSS SSGSLAKDFF NLPKDTCSDG GFHDLGCPND SFSLSEQMEL 180 QFLSDELELA ITDRAETPSL DEIYEMPMAM SNPGTEVSPR QNCVSAVMSH SSPGAATNQK 240 PRMRWTPELH ERFVQAVHSL EGPEKATPKA VLKLMNVEGL TIYHVKSHLQ KYRLAKYIPE 300 KREEKKNSNS EEKKSASSNS ETDGRKKGAI QITEALRMQM EVQKQLHEQL EVQRVLQLRI 360 EEHARYLQRM LEEQQKSGAL ITSSETLSSP TKSKQESSPQ LSSPTKNKAE EENSPKRHRI 420 DNKASESGEE NSPKRPRLDN KASESEERVR

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MNSHSLVSGT ADEGGVGQDC SSSISLVHNF LNFPPETRKA PSPFIRSQSP DSASHDHHPW  60
MKHGSKSTFS RSSSFCTNLY LSSSSSSETR KHLGNSLLPF LPNPSTYNQT ASAVESAKSP  120
AIFSEDIVTV TPPYNGGGSS SSGSLAKDFF NLPKDTCSDG GFHDLGCPND SFSLSEQMEL  180
QFLSDELELA ITDRAETPSL DEIYEMPMAM SNPGTEVSPR QNCVSAVMSH SSPGAATNQK  240
PRMRWTPELH ERFVQAVHSL EGPEKATPKA VLKLMNVEGL TIYHVKSHLQ KYRLAKYIPE  300
KREEKKNSNS EEKKSASSNS ETDGRKKGAI QITEALRMQM EVQKQLHEQL EVQRVLQLRI  360
EEHARYLQRM LEEQQKSGAL ITSSETLSSP TKSKQESSPQ LSSPTKNKAE EENSPKRHRI  420
DNKASESGEE NSPKRPRLDN KASESEERVR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-24	240	297	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-24	240	297	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-24	240	297	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-24	240	297	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-24	240	297	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-24	240	297	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-24	240	297	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-24	240	297	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010534785.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010534781.1	0.0	PREDICTED: myb family transcription factor PHL6-like
Refseq	XP_010534782.1	0.0	PREDICTED: myb family transcription factor PHL6-like
Refseq	XP_010534783.1	0.0	PREDICTED: myb family transcription factor PHL6-like
Refseq	XP_010534785.1	0.0	PREDICTED: myb family transcription factor PHL6-like
Refseq	XP_010534786.1	0.0	PREDICTED: myb family transcription factor PHL6-like
Swissprot	Q949U2	0.0	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	R0HYE1	0.0	R0HYE1_9BRAS; Uncharacterized protein
STRING	XP_010534781.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-160	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]