PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010534621.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 417aa    MW: 45896.9 Da    PI: 4.7398
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010534621.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-1871121155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+GVr++  +g+WvAeIr+p+   k +r +lg+f  a+eAa a+++a+++++g
  XP_010534621.1  71 CDYRGVRQRT-WGKWVAEIREPN---KGTRLWLGTFPNAYEAALAYDNAARAMYG 121
                     68*****999.**********93...25************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-1271121IPR001471AP2/ERF domain
CDDcd000188.71E-3171130No hitNo description
PROSITE profilePS5103221.15372129IPR001471AP2/ERF domain
SMARTSM003801.9E-3772135IPR001471AP2/ERF domain
PRINTSPR003675.7E-97384IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-2073130IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.1E-3073130IPR001471AP2/ERF domain
PRINTSPR003675.7E-995111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MPSESGDRKR KSGGRRNGAI VAEILNKWKE YNERVATCSS DGGKKPGQRA HAKGSKKGCM  60
TGKGGPENFD CDYRGVRQRT WGKWVAEIRE PNKGTRLWLG TFPNAYEAAL AYDNAARAMY  120
GQSARLNLPH ITKSSSSAAA MTTITDSTTL TGESEVCAVE DTNVIPSSIQ VKLEHCNGEA  180
IPCEVPLDTD MVEAREGRNA RELGSTDDCG IRPVLKEEPH GQMGSNDVME EAMNGGHEEW  240
TIGHHRQEPE DSWETFDVEE LLNLLDEKHI LPEEEEAKQG GLEAERPSDF TYQMQYPDAK  300
LLGSLNHMVN ADSGMDYGFP LVRPNQPENE NIDGGQFLGL DLTRLDFRAT HLSGIEDDTH  360
NTDQDLEFCP SLPKVATCDC GSYCNRDCDY GSRCGGELSC RKMMKKLGAP PQVSGSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1773129360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010534621.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010534621.10.0PREDICTED: dehydration-responsive element-binding protein 2C isoform X1
TrEMBLR0FXH63e-88R0FXH6_9BRAS; Uncharacterized protein
STRINGXP_010534621.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85322538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.12e-64ERF family protein