PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010534360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C3H | ||||||||
Protein Properties | Length: 238aa MW: 25465.7 Da PI: 9.8805 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.6 | 8.1e-07 | 37 | 60 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H XP_010534360.1 37 KSKPCTKFFSTSGCPFGENCHFLH 60 7789******************** PP | |||||||
2 | zf-CCCH | 36.9 | 6e-12 | 204 | 229 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt++C +f++ G C +GdrC+FaHg+ XP_010534360.1 204 YKTKICERFSK-GNCTFGDRCHFAHGE 229 9**********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.21 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.84 | 35 | 63 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 36 | 62 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-8 | 37 | 60 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.0E-5 | 37 | 60 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 4.97E-15 | 102 | 181 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.6E-11 | 110 | 180 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.299 | 111 | 175 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.2E-15 | 111 | 179 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 6.20E-13 | 113 | 175 | No hit | No description |
Pfam | PF00013 | 7.6E-11 | 113 | 177 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-16 | 198 | 234 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.03E-8 | 203 | 233 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.2E-8 | 203 | 229 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.215 | 203 | 230 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-9 | 204 | 229 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MDARKRERHE AGSYNFNGGF KRSKQEMESY STGLGSKSKP CTKFFSTSGC PFGENCHFLH 60 YVPGGYNVVA QMTNLGPPVS QVSRNMPGSG AGRYPGRTEP ATGSVLSFGA SATAKISVDA 120 SLAGPIIGKG GINSKQICRQ TGAKLSIKDH ERDPNLKNIE LEGTFEQINE ASAMVRELIV 180 RVSSAAKKPP GGGFEGKPHP GSNYKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGVA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010534360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010534360.1 | 1e-176 | PREDICTED: zinc finger CCCH domain-containing protein 36-like isoform X1 | ||||
Swissprot | Q9C7C3 | 1e-133 | C3H36_ARATH; Zinc finger CCCH domain-containing protein 36 | ||||
TrEMBL | E4MYD4 | 1e-138 | E4MYD4_EUTHA; mRNA, clone: RTFL01-50-B10 | ||||
TrEMBL | V4M8U6 | 1e-138 | V4M8U6_EUTSA; Uncharacterized protein | ||||
STRING | XP_010534360.1 | 1e-175 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2336 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 1e-127 | C3H family protein |
Publications ? help Back to Top | |||
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