PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

ARR-B

Protein Properties

Length: 561aa MW: 63095.6 Da PI: 5.2066

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010534175.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	84.3	1.3e-26	196	250	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt eLH++Fv+av+q+G +kA Pk+il+lm+v+ Lt+e+v+SHLQkYRl XP_010534175.1 196 KARVVWTFELHQKFVHAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL 250 68****************************************************8 PP
2	Response_reg	81.1	3.7e-27	14	120	1	107
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+p+ +++l+++l+k y ev+++ ++eal+ll+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + + + ++ G XP_010534175.1 14 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLAREALKLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHG 106 89*******************.***********999999******************6644.8****************** PP ESEEEESS--HHHH CS Response_reg 94 akdflsKpfdpeel 107 a d+l Kp+ ++el XP_010534175.1 107 ACDYLLKPIRMKEL 120 *******99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF036392	6.9E-145	1	528	IPR017053	Response regulator B-type, plant
Gene3D	G3DSA:3.40.50.2300	2.0E-44	11	135	No hit	No description
SuperFamily	SSF52172	1.08E-35	11	135	IPR011006	CheY-like superfamily
SMART	SM00448	8.1E-32	12	124	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	43.879	13	128	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	2.6E-24	14	121	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	4.60E-31	15	128	No hit	No description
SuperFamily	SSF46689	5.38E-17	194	254	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.2E-28	194	255	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-22	196	250	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-7	198	249	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0009735	Biological Process	response to cytokinin
GO:0010082	Biological Process	regulation of root meristem growth
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence Send to blast
MTMEKCFSPV GLRVLVVDDD PTWLKILEKM LKKCSYEVTT CGLAREALKL LRERKDGYDI 60 VISDVNMPDM DGFKLLEHVG LEMDLPVIMM SVDGETSRVM KGVQHGACDY LLKPIRMKEL 120 KIIWQHVLRK KLQEFRDVEG YEGAESIWIS RHGLDQSEDA HFLGGEEVSF GRKRKDTEKK 180 QHQDDRDLTD PSSTKKARVV WTFELHQKFV HAVNQIGCDH KAGPKKILDL MNVPWLTREN 240 VASHLQKYRL YLSRLEKEKG QKNMDSPPKD AEVCPSHQSP RKIQPAEVQN SSYTFSGGSP 300 GVQTPNPSAT DVDQKGIAST AVSETKISNI LSPQKAKKPR TGYDPSLAPF ASEASPSVMN 360 SSLPQQYSWN DVPQFLESKP ISLGGSFLPQ PLTGQSYYAE NPVPCLIETE VKPPFEIPVS 420 SCLNRVAPVN GDDFLLQQDK NSTMGLHDLS APSSISGTML QESNCSIPCN TESILRNLNW 480 DFPEPHPAAS LDRDLGLFWL QGDRFLENSG LQNTEFTDYN DPSFLAAYPL HMYDATRFDN 540 ELLLLPDQDE YSLVDQGLFI V

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence Send to blast

MTMEKCFSPV GLRVLVVDDD PTWLKILEKM LKKCSYEVTT CGLAREALKL LRERKDGYDI  60
VISDVNMPDM DGFKLLEHVG LEMDLPVIMM SVDGETSRVM KGVQHGACDY LLKPIRMKEL  120
KIIWQHVLRK KLQEFRDVEG YEGAESIWIS RHGLDQSEDA HFLGGEEVSF GRKRKDTEKK  180
QHQDDRDLTD PSSTKKARVV WTFELHQKFV HAVNQIGCDH KAGPKKILDL MNVPWLTREN  240
VASHLQKYRL YLSRLEKEKG QKNMDSPPKD AEVCPSHQSP RKIQPAEVQN SSYTFSGGSP  300
GVQTPNPSAT DVDQKGIAST AVSETKISNI LSPQKAKKPR TGYDPSLAPF ASEASPSVMN  360
SSLPQQYSWN DVPQFLESKP ISLGGSFLPQ PLTGQSYYAE NPVPCLIETE VKPPFEIPVS  420
SCLNRVAPVN GDDFLLQQDK NSTMGLHDLS APSSISGTML QESNCSIPCN TESILRNLNW  480
DFPEPHPAAS LDRDLGLFWL QGDRFLENSG LQNTEFTDYN DPSFLAAYPL HMYDATRFDN  540
ELLLLPDQDE YSLVDQGLFI V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	1e-17	192	255	1	63	ARR10-B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12610214}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00010	PBM	Transfer from AT1G67710	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010534175.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010534175.1	0.0	PREDICTED: two-component response regulator ARR11-like isoform X1
Refseq	XP_010550447.1	0.0	PREDICTED: two-component response regulator ARR11-like isoform X1
Swissprot	Q9FXD6	0.0	ARR11_ARATH; Two-component response regulator ARR11
TrEMBL	A0A087HGC4	0.0	A0A087HGC4_ARAAL; Two-component response regulator
STRING	XP_010534175.1	0.0	(Tarenaya hassleriana)
STRING	XP_010550447.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8066	27	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67710.1	0.0	response regulator 11

Publications ? help Back to Top
Zwack PJ, et al. Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress. Plant Physiol., 2016. 172(2): p. 1249-1258 [PMID:27550996] Meng WJ, et al. Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL. Plant Cell, 2017. 29(6): p. 1357-1372 [PMID:28576846]