PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010533896.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 286aa    MW: 32886.1 Da    PI: 10.0517
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010533896.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.51.3e-53151421128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yLkkkv++ +l++ ++i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++
  XP_010533896.1  15 LPPGFRFHPTDEELVVHYLKKKVASIPLPV-SIIAEVDLYKFDPWELPCKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTS 108
                     79****************************.89***************8888899*************************************998 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kk Lvfy g+ pkg kt+W+mheyrl
  XP_010533896.1 109 nSHHKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142
                     66778***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-6411176IPR003441NAC domain
PROSITE profilePS5100561.18715175IPR003441NAC domain
PfamPF023651.9E-2816142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MESANSCTKS SHPSLPPGFR FHPTDEELVV HYLKKKVASI PLPVSIIAEV DLYKFDPWEL  60
PCKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSNS HHKVGVKKAL  120
VFYGGKPPKG IKTNWIMHEY RLIDGDVPNS KPDLSSSKKS SLRLDDWVLC RIYKKNTSHR  180
PMDQRAGEDL MDGMIATVQN LHHQNQKSSA NSSSSVLDNN EEQHFFMDCS TMVVSSSSNG  240
SDHLPLIKQV SWRSQQWRRQ QQQQHRRRRQ RQQQQQQQQL FCVSTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-761417819171NAC domain-containing protein 19
3swm_B6e-761417819171NAC domain-containing protein 19
3swm_C6e-761417819171NAC domain-containing protein 19
3swm_D6e-761417819171NAC domain-containing protein 19
3swp_A6e-761417819171NAC domain-containing protein 19
3swp_B6e-761417819171NAC domain-containing protein 19
3swp_C6e-761417819171NAC domain-containing protein 19
3swp_D6e-761417819171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010533896.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010533896.10.0PREDICTED: NAC transcription factor 25 isoform X2
SwissprotQ8GY421e-109NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A2K2API51e-121A0A2K2API5_POPTR; Uncharacterized protein
STRINGXP_010533895.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-98NAC domain containing protein 25