PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010533772.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 441aa    MW: 48110.7 Da    PI: 10.0521
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010533772.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05212234223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      C+ Cg++F+  +nL+ H+ + H
  XP_010533772.1 212 ACSQCGEVFPKLENLEMHQAVrH 234
                     6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.058211239IPR007087Zinc finger, C2H2
PROSITE patternPS000280211234IPR007087Zinc finger, C2H2
SuperFamilySSF563991.53E-20236437No hitNo description
Gene3DG3DSA:3.90.228.101.5E-9238437IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MALLTFYPEK SEPPQTQKKQ PLPSKRKKRQ IQPRNAQTRK PQKQTPQKLP SSWDQFKNLL  60
TCKQIEGSRI HDPSKNSQSE PYITATHPNS SSKLITSSCG SICSFRDVAH GNTRVVHRAD  120
NSPGPGNPIH DPETRILNRK SGQPGSSSSR SLTSVSKRSN GRESYTSSSS TATATTTTSL  180
IRGMQFRKLS GCYECHMIVD PSRNPISPRV CACSQCGEVF PKLENLEMHQ AVRHAVSELG  240
PEDSGRNVVE IIFKSSWLKK DNPICKIERI LKVHNTQRTI QRFEDCRDAV KARALQTPRK  300
DARCAADGNE LLRFHCATLV CPLGARGSSS LCSVSGCGVC TLIRNGFGGQ AGVFGGGVRT  360
TASSGRAHDS LGASGSLRKA MLVCRVIAGR VKRGVVDEEN GGAYDSLAEN AGAYSNLEEL  420
LVFNPRAILP CFVVIYKVLE S
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010533772.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010533772.10.0PREDICTED: uncharacterized protein LOC104809457
TrEMBLD7KT600.0D7KT60_ARALL; Zinc finger family protein
STRINGXP_010533772.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-176C2H2-like zinc finger protein