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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010533768.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | YABBY | ||||||||
Protein Properties | Length: 220aa MW: 24353.5 Da PI: 8.8431 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 203.2 | 1e-62 | 14 | 176 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 e++Cyv+Cn C+t+lavsvPstsl+k+vtvrCGhCt+ll v++ l ++ + +s+ +++ + + ++ +++ + +++ ++ +s XP_010533768.1 14 PLHEHLCYVHCNICDTVLAVSVPSTSLSKTVTVRCGHCTTLLPVHMPL---LFPSLGQ-FHSFVHNQNPTGEIQNPSTNHTINESSGNHLFATSP 104 5689***************************************87655...5566665.356666666677777777777776666666777777 PP YABBY 100 klsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ ++e+pr ++ + rP krqrvPsaynrfikeeiqrika+nP+i+hreafsaaaknWahfP+i fgl XP_010533768.1 105 PCPRGMTKELPRSHQvIKRPQAKRQRVPSAYNRFIKEEIQRIKAENPNITHREAFSAAAKNWAHFPHIQFGL 176 889************4557889************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.9E-63 | 16 | 176 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 6.94E-9 | 114 | 170 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 3.38E-6 | 121 | 166 | No hit | No description |
Gene3D | G3DSA:1.10.30.10 | 8.1E-5 | 127 | 170 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MSSSSSSSSS SDQPLHEHLC YVHCNICDTV LAVSVPSTSL SKTVTVRCGH CTTLLPVHMP 60 LLFPSLGQFH SFVHNQNPTG EIQNPSTNHT INESSGNHLF ATSPPCPRGM TKELPRSHQV 120 IKRPQAKRQR VPSAYNRFIK EEIQRIKAEN PNITHREAFS AAAKNWAHFP HIQFGLAPDQ 180 LARRSSIRHQ EGEDPVMKDV LLASANVGMA PAINYSITYN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269|PubMed:10323860, ECO:0000269|PubMed:10331982, ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:11812777, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:9878633, ECO:0000269|Ref.3, ECO:0000269|Ref.6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010533768.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010533768.1 | 1e-164 | PREDICTED: axial regulator YABBY 5-like | ||||
Swissprot | O22152 | 6e-56 | YAB1_ARATH; Axial regulator YABBY 1 | ||||
TrEMBL | A0A0D2T6N1 | 5e-83 | A0A0D2T6N1_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A2P5R6J2 | 5e-83 | A0A2P5R6J2_GOSBA; Uncharacterized protein | ||||
STRING | XP_010533768.1 | 1e-163 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 7e-58 | YABBY family protein |