PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010533731.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TALE
Protein Properties Length: 311aa    MW: 34383.7 Da    PI: 6.8395
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010533731.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.11.3e-072602932154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp+++++++L +++gL+ +q+ +WF N+R +
  XP_010533731.1 260 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 293
                     679*****************************87 PP
2ELK25.43.3e-09214235122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK +L++++++++ ++++E++
  XP_010533731.1 214 ELKIELKQGFKSRIEDVREEIL 235
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.8E-194084IPR005540KNOX1
PfamPF037908.0E-174283IPR005540KNOX1
SMARTSM012562.1E-2399154IPR005541KNOX2
PfamPF037917.8E-18103153IPR005541KNOX2
PROSITE profilePS512139.132214234IPR005539ELK domain
PROSITE profilePS5007111.451234297IPR001356Homeobox domain
SMARTSM003891.7E-10236301IPR001356Homeobox domain
SuperFamilySSF466891.28E-15236300IPR009057Homeodomain-like
CDDcd000861.30E-10237298No hitNo description
Gene3DG3DSA:1.10.10.604.7E-24241299IPR009057Homeodomain-like
PfamPF059206.3E-17254293IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MQEAAALGII GGHGGGSNIS GGGGGEVRDP MAAAVAEQNK QLKAEIATHP MYEQLLAAHV  60
ACLRVATPID QLPSIDSQLS QSHHLLRSYA AMAAASSSLS SSHHDRHELD NFLAQYLIVL  120
CSFKEQLQQH VRVHAVEAVM ACREIENNLH ALTGTTLGEG SGATMSDDED ELKMDFSSEN  180
SGGGGGDIGH DMMGFGPLLP TESERSLMER VRQELKIELK QGFKSRIEDV REEILRKRRA  240
GKLPGDTTTV LKNWWQLHAK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHNNSH  300
SVTSLKSKRK H
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010533731.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010533731.10.0PREDICTED: homeobox protein HD1
SwissprotQ9FPQ80.0KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A1J3CJC20.0A0A1J3CJC2_NOCCA; Homeobox protein HD1
STRINGXP_010533731.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-162KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]