PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010533716.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

GRAS

Protein Properties

Length: 659aa MW: 73411.2 Da PI: 6.9812

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010533716.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	428.4	5.6e-131	272	644	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 v lL+ c ea+++++ ++++++arl +lasp+g p++Rl+ay+teALa r++r+++++++ +pp+e ++ +++e+ + l+++++v+Pi+kf h XP_010533716.1 272 VGLLTGCLEAITTKNIVAINHFMARLGDLASPRGkIPLTRLTAYYTEALALRITRMWPHIFHVMPPREFERADEDESGTGLRFLNQVTPIPKFIH 366 679*****************************66******************************************************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 +taN+++l+a+eg+ervHiiDfdi+qG+QWp+++q+LasRp++p ++RiTg+g+ sk+el+etg+rL +fAe+l++pfef++ v++rled++ XP_010533716.1 367 FTANEMLLRAFEGKERVHIIDFDIKQGVQWPSFFQSLASRPNPPLHVRITGIGE----SKQELNETGDRLYRFAEALNLPFEFHP-VVDRLEDVR 456 **************************************************....***********************.7**** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 l++L+vk+gE +aVn+v+qlh+ l +++ + +++L l++s++P vv++eqeadh+++ + +r++++l+yysa+fdsl+ +lp++s r+kv XP_010533716.1 457 LWMLHVKEGEYVAVNCVFQLHTALYDTTGAAI--RAFLGLIRSINPIAVVIAEQEADHDTGHLEARVCHSLKYYSAIFDSLHFSLPTDSLIRVKV 549 ********************99888888..9******************************************************** PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrve.....eesgslvlgWkdrpLvsvSaW 373 E + +grei+n+vaceg++r+erh ++++Wr+ le++GF+++ +se+++ q k llr+++ + g++ve ee g ++l W+d++L++vSaW XP_010533716.1 550 EDM-FGREIRNIVACEGSHRQERHMRFGRWRRLLEQSGFRNLGVSEREVLQSKVLLRMYGggGGGFTVErreeeEEGGGVTLRWSDQELYTVSAW 643 .****************************************************9755569887744467777************* PP GRAS 374 r 374 + XP_010533716.1 644 T 644 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.482	245	617	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.0E-128	272	644	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence Send to blast
MLAGCSSSTL LSPTRRLRTE SPAAVQFHHH HHQACHFPMN TQRLDLQCSS FSRKESSSNR 60 SSSQFARPLG RSNSLDGKPI QSKTSLKQHI KLPPLATARG GEGFSWNSGD NINKGKNLKR 120 LADGDDESCL SRAKRKRGES QDQPLGSGDS FWFGHFTGQN SPEVPFSLTC SGEEISQQWP 180 SNPNWVDSVI TELAGIGDKE GESSRPAPVK EASGSSASSE NGLRYRLPEP TNGSRNPYSH 240 EGRGGGGGGA GTSEEVDNNN HGDELQKDFE LVGLLTGCLE AITTKNIVAI NHFMARLGDL 300 ASPRGKIPLT RLTAYYTEAL ALRITRMWPH IFHVMPPREF ERADEDESGT GLRFLNQVTP 360 IPKFIHFTAN EMLLRAFEGK ERVHIIDFDI KQGVQWPSFF QSLASRPNPP LHVRITGIGE 420 SKQELNETGD RLYRFAEALN LPFEFHPVVD RLEDVRLWML HVKEGEYVAV NCVFQLHTAL 480 YDTTGAAIRA FLGLIRSINP IAVVIAEQEA DHDTGHLEAR VCHSLKYYSA IFDSLHFSLP 540 TDSLIRVKVE DMFGREIRNI VACEGSHRQE RHMRFGRWRR LLEQSGFRNL GVSEREVLQS 600 KVLLRMYGGG GGGFTVERRE EEEEGGGVTL RWSDQELYTV SAWTPGEIGG SSSSFSQRS

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence Send to blast

MLAGCSSSTL LSPTRRLRTE SPAAVQFHHH HHQACHFPMN TQRLDLQCSS FSRKESSSNR  60
SSSQFARPLG RSNSLDGKPI QSKTSLKQHI KLPPLATARG GEGFSWNSGD NINKGKNLKR  120
LADGDDESCL SRAKRKRGES QDQPLGSGDS FWFGHFTGQN SPEVPFSLTC SGEEISQQWP  180
SNPNWVDSVI TELAGIGDKE GESSRPAPVK EASGSSASSE NGLRYRLPEP TNGSRNPYSH  240
EGRGGGGGGA GTSEEVDNNN HGDELQKDFE LVGLLTGCLE AITTKNIVAI NHFMARLGDL  300
ASPRGKIPLT RLTAYYTEAL ALRITRMWPH IFHVMPPREF ERADEDESGT GLRFLNQVTP  360
IPKFIHFTAN EMLLRAFEGK ERVHIIDFDI KQGVQWPSFF QSLASRPNPP LHVRITGIGE  420
SKQELNETGD RLYRFAEALN LPFEFHPVVD RLEDVRLWML HVKEGEYVAV NCVFQLHTAL  480
YDTTGAAIRA FLGLIRSINP IAVVIAEQEA DHDTGHLEAR VCHSLKYYSA IFDSLHFSLP  540
TDSLIRVKVE DMFGREIRNI VACEGSHRQE RHMRFGRWRR LLEQSGFRNL GVSEREVLQS  600
KVLLRMYGGG GGGFTVERRE EEEEGGGVTL RWSDQELYTV SAWTPGEIGG SSSSFSQRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	8e-69	278	645	25	379	Protein SCARECROW
5b3h_D	8e-69	278	645	25	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010533716.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010533716.1	0.0	PREDICTED: scarecrow-like protein 28
Swissprot	Q9CAN3	0.0	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	V4KGW4	0.0	V4KGW4_EUTSA; Uncharacterized protein
STRING	XP_010533716.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7296	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	0.0	GRAS family protein