PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010533637.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

TALE

Protein Properties

Length: 588aa MW: 66969.5 Da PI: 7.053

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010533637.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.3	6.2e-09	412	449	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + XP_010533637.1 412 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 449 664459******************************88 PP
2	BELL	100.3	1.5e-32	272	343	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e++el+k+kakLls+l+e+++r+++y++q+++v+ +Fe++ag+g+a+ Yt+ A ka+SrhFrcL+d +a qi XP_010533637.1 272 EFMELHKRKAKLLSMLDEINRRHHHYRDQMRAVATAFETAAGVGAAETYTASAAKAMSRHFRCLRDGVARQI 343 579*******************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.6E-47	197	341	IPR006563	POX domain
Pfam	PF07526	1.3E-41	202	339	IPR006563	POX domain
PROSITE profile	PS50071	12.001	390	453	IPR001356	Homeobox domain
SMART	SM00389	2.0E-9	393	457	IPR001356	Homeobox domain
CDD	cd00086	2.08E-11	393	454	No hit	No description
SuperFamily	SSF46689	1.24E-17	394	461	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.2E-28	396	459	IPR009057	Homeodomain-like
Pfam	PF05920	7.7E-18	410	449	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence Send to blast
MARDFYASGE ILSSNHPATS NTHHHEFFNQ IHGFDDDTNP SNHHHQHQIF SLNPNAGLIH 60 FSKQQHHNHH HHHHHHQISM TSGLEETSGG ENLLMEDSSS SMRCSNVNFP CDIVSEERPP 120 TITATRPQSQ CLSLSLSPSN PSSISLQHFE LRPHAQHDHV TVVGSSRQGY FGKPHHNLQM 180 MMMMMMMNNS PNQHHHQNEF QILRSKYLAP VQELLNEICS LGTKQSDHEE MTMKNQKGEE 240 QEWGGNNDDK DNHRHDDDLS ARKHVPPLHS LEFMELHKRK AKLLSMLDEI NRRHHHYRDQ 300 MRAVATAFET AAGVGAAETY TASAAKAMSR HFRCLRDGVA RQIHATKKAM GEREDPVAPG 360 MTRGDTPRLR LLDQAFRQQK VYSQMSLVDA HPWRPQRGLP ERAVSILRAW LFEHFLHPYP 420 SDVDKHILAR QTGLSRSQVS NWFINARVRL WKPMIEEMYS EETRGEQKDE ANISNQENDM 480 LTGPIHEPNR MNRVDPESLS SIITNPSSIT ARKPSQTHQH ATTSSFGSAF DFQLYGHQAV 540 TYDGDSSNQV SGKVGQLQYS SSLLDGDHQA LILPHRNLMG AQLVHDIV

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence Send to blast

MARDFYASGE ILSSNHPATS NTHHHEFFNQ IHGFDDDTNP SNHHHQHQIF SLNPNAGLIH  60
FSKQQHHNHH HHHHHHQISM TSGLEETSGG ENLLMEDSSS SMRCSNVNFP CDIVSEERPP  120
TITATRPQSQ CLSLSLSPSN PSSISLQHFE LRPHAQHDHV TVVGSSRQGY FGKPHHNLQM  180
MMMMMMMNNS PNQHHHQNEF QILRSKYLAP VQELLNEICS LGTKQSDHEE MTMKNQKGEE  240
QEWGGNNDDK DNHRHDDDLS ARKHVPPLHS LEFMELHKRK AKLLSMLDEI NRRHHHYRDQ  300
MRAVATAFET AAGVGAAETY TASAAKAMSR HFRCLRDGVA RQIHATKKAM GEREDPVAPG  360
MTRGDTPRLR LLDQAFRQQK VYSQMSLVDA HPWRPQRGLP ERAVSILRAW LFEHFLHPYP  420
SDVDKHILAR QTGLSRSQVS NWFINARVRL WKPMIEEMYS EETRGEQKDE ANISNQENDM  480
LTGPIHEPNR MNRVDPESLS SIITNPSSIT ARKPSQTHQH ATTSSFGSAF DFQLYGHQAV  540
TYDGDSSNQV SGKVGQLQYS SSLLDGDHQA LILPHRNLMG AQLVHDIV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	4e-16	399	457	5	63	Homeobox protein Meis2
3k2a_B	4e-16	399	457	5	63	Homeobox protein Meis2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269\|PubMed:12244239, ECO:0000269\|PubMed:17693535, ECO:0000269\|PubMed:22786869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010533637.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010533636.1	0.0	PREDICTED: homeobox protein BEL1 homolog
Refseq	XP_010533637.1	0.0	PREDICTED: homeobox protein BEL1 homolog
Swissprot	Q38897	0.0	BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBL	E4MWG9	0.0	E4MWG9_EUTHA; mRNA, clone: RTFL01-17-O06
TrEMBL	V4LWA4	0.0	V4LWA4_EUTSA; Uncharacterized protein
STRING	XP_010533636.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	1e-160	TALE family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171]