PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010533432.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 390aa    MW: 42149.4 Da    PI: 8.7457
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010533432.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.51.9e-12225226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    ++elCr+f+r G C+yG+rCkF H+
  XP_010533432.1  2 RRELCRNFQR-GSCQYGARCKFLHS 25
                    69********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.0E-7126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.126127IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-10225IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6228IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-9425IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MRRELCRNFQ RGSCQYGARC KFLHSSPQQQ QQQQQQPKTN PFGFGSQTGA QQQQQKPNPF  60
GFGVQGGSQH AGSNKPNQLK SNTWSRFSPI PGGGASSHQT GDKPQQADHK CTDPAACKRI  120
IDEDFKNEKP LWKLTCYSHW RCLPCDVVGD TSYEELRATS YDEAKRGSSL QLIVERERNM  180
VNSKLAEFEN FLRSPYRGHG STGIPSQNTG FATSPSMFPP TGQINAPSAF PGFAQQSGFH  240
GTSSGIRPAF PPQSSPGPPP SSFASFNQPS DPFNMNPPQS VPSGPSGFQL NNPTPGSPFA  300
SNPAAFITPS TPQSSPFSAS VTGTPSFNMS QNQTSLNFSI PNASPEADTM KNSSGMNQQG  360
EAASGDNSIW LKPKWNPGEI PEQAPPNAFV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010533432.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010533432.10.0PREDICTED: zinc finger CCCH domain-containing protein 16
SwissprotQ9FWS31e-120C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLA0A1P8AU481e-124A0A1P8AU48_ARATH; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGXP_010533432.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107242731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.21e-108C3H family protein