PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010533398.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bZIP
Protein Properties Length: 357aa    MW: 39073.8 Da    PI: 8.7517
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010533398.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.38.2e-14246305260
                     XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHH CS
          bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke.leelkkevaklk 60 
                     ++ +r +r +kNRe+A rsR+RK+a++ eLe  + +Le+eN++L ke +e+ k+  +k+ 
  XP_010533398.1 246 AAAQRHKRTIKNRESAARSRERKQAYQLELESLASKLEEENEQLSKEkAERTKERHKKHL 305
                     5789****************************************8762556665555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.1E-11244302No hitNo description
SMARTSM003381.4E-6245309IPR004827Basic-leucine zipper domain
PfamPF001701.7E-12246303IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.645247299IPR004827Basic-leucine zipper domain
CDDcd147072.52E-15249295No hitNo description
SuperFamilySSF579591.75E-8250300No hitNo description
PROSITE patternPS000360252267IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MASSKVMPSS NSRNSGLSRR NSSSVFSSPS VRSHQLKRDS SADRSRLSGV YDRLNNGFGS  60
TITVDGILRD VYGTDHPAVA AESTLSDASI SLMDPPAPGL VEIAVNVDRS GHGGSGGGMS  120
VTETQGKSVD EVWSEIVSGE RKEMKEEAQD EIMTLEDFLA KAAVDDTVGT AEWEDMDAKI  180
PPERLGGGGC AFDPVPHKPL QMIDNVEGTI VGFGNGLDVY GGGGVGGRGG SRGKRARMIM  240
EPLDKAAAQR HKRTIKNRES AARSRERKQA YQLELESLAS KLEEENEQLS KEKAERTKER  300
HKKHLSLSHL VDAALVKGSI YGRYCFKHTS VLRYRTKKNL SRCYQMMHDR RGFEHFS
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010533398.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010533398.10.0PREDICTED: G-box-binding factor 4-like isoform X1
SwissprotP427771e-53GBF4_ARATH; G-box-binding factor 4
TrEMBLE4MY827e-86E4MY82_EUTHA; mRNA, clone: RTFL01-45-A18
TrEMBLV4LQ587e-86V4LQ58_EUTSA; Uncharacterized protein
STRINGXP_010533398.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.13e-54bZIP family protein