PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010533365.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 451aa    MW: 49284.1 Da    PI: 10.1002
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010533365.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-05202224223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      Cp Cg++F+  ++L+ H+ + H
  XP_010533365.1 202 ACPQCGEVFPKLESLELHQAVrH 224
                     6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.683201229IPR007087Zinc finger, C2H2
PROSITE patternPS000280201224IPR007087Zinc finger, C2H2
SuperFamilySSF563991.82E-18226447No hitNo description
Gene3DG3DSA:3.90.228.102.3E-11229447IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MALLPLPDRT KLQAQTQTQT RLSSDPSKKK KKRPAKPPSQ PQTLPPPRTR TQTQKHKPLF  60
SSPSSWSQIK YLLSCKQIEG PRVHDPSKIP HHGLYTSATL SSSCGSSFCR LSDVVYGNAR  120
VVHRSDHSSS SPESSNLGQE TRLLTRKPVS RGSNVVRSNG CGGYTSSSTS SRTMHFTKLS  180
GCYECRMIVD PSRYPIAPRV CACPQCGEVF PKLESLELHQ AVRHAVSELG PEDSGRNIVD  240
IIFKSSWYRK ESPIYKIERI LKVHNSQRTI QRFEDCRDAV KSRALASTGK NPRSAADGNE  300
LLRFHCTTVS CSLGAAGGSS LCSAVPGCRV CTIIRHGIQA KTHRLGPSGE FSGDGGREVR  360
GVRTTASSGR AHEALRCFDR RRAMLVCRVI AGRVRRVHCD APPLGSGAEE DGAYDSVAGS  420
TGVYGNLDDL VVFSPRAILP CFVVIYKVLE P
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010533365.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010533365.10.0PREDICTED: uncharacterized protein LOC104809174
TrEMBLA0A1J3HX580.0A0A1J3HX58_NOCCA; Uncharacterized protein
STRINGXP_010533365.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-141C2H2-like zinc finger protein