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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010533325.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | Trihelix | ||||||||
Protein Properties | Length: 210aa MW: 23361.2 Da PI: 10.1753 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 91.4 | 9.4e-29 | 42 | 125 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++e+laL+++r+eme ++r+++lk+plWe++s+kmre gf+rs+k+Ckek+en+ k++k++keg+++++ + +t+++ d+le XP_010533325.1 42 RWPRSETLALLRIRSEMELAFRDSNLKAPLWEQISRKMRELGFRRSAKKCKEKFENVYKYHKRTKEGRSGKR--EGKTYQFSDELE 125 8********************************************************************974..445699998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0044 | 39 | 101 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.58E-28 | 41 | 106 | No hit | No description |
PROSITE profile | PS50090 | 6.853 | 41 | 99 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 4.3E-20 | 41 | 126 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MLGDSGEVLE SSAVAASAGG EEKDVKLEDS GERATVGGGG NRWPRSETLA LLRIRSEMEL 60 AFRDSNLKAP LWEQISRKMR ELGFRRSAKK CKEKFENVYK YHKRTKEGRS GKREGKTYQF 120 SDELEAFENI HHYPTEPKSR PVKPPTTTTT TTAASIVPWI SSSNPSSGTN PTLFTKQQPT 180 PPFVLNHSAH TVLGSGHKLT NPYNFARNVP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010533325.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010521043.1 | 1e-155 | PREDICTED: trihelix transcription factor GT-2-like | ||||
Refseq | XP_010533325.1 | 1e-155 | PREDICTED: trihelix transcription factor GT-2-like, partial | ||||
Swissprot | Q39117 | 7e-61 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A178W7Z2 | 2e-58 | A0A178W7Z2_ARATH; GT2 | ||||
STRING | XP_010521043.1 | 1e-154 | (Tarenaya hassleriana) | ||||
STRING | XP_010533325.1 | 1e-154 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6226 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 3e-56 | Trihelix family protein |