PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010532854.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 299aa    MW: 33288.1 Da    PI: 5.9781
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010532854.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-1892145356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe  +++  e++ +LAk l+L+ rqV +WFqNrRa++k
  XP_010532854.1  92 KKRRLSVEQVKALEKSFEIGNKLEPERKMQLAKTLNLQPRQVAIWFQNRRARWK 145
                     456899***********************************************9 PP
2HD-ZIP_I/II128.52.7e-4191182192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrls eqvk+LE+sFe  +kLeperK++la++L+lqprqva+WFqnrRAR+ktkqlEkdy++L+r++++lk+ene L+++++e++++l 
  XP_010532854.1  91 EKKRRLSVEQVKALEKSFEIGNKLEPERKMQLAKTLNLQPRQVAIWFQNRRARWKTKQLEKDYDVLRRQFENLKAENEILRAQNQEMHAQLV 182
                     69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-2070148IPR009057Homeodomain-like
SuperFamilySSF466897.7E-2086149IPR009057Homeodomain-like
PROSITE profilePS5007117.16787147IPR001356Homeobox domain
SMARTSM003893.7E-1990151IPR001356Homeobox domain
PfamPF000466.6E-1692145IPR001356Homeobox domain
CDDcd000869.45E-1892148No hitNo description
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
CDDcd146860.00105138181No hitNo description
PfamPF021835.6E-14147187IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSCNNAMAFF PANFMFQNPH ENDRHPQPPP LLPSCSLPQD FHGVSSFLGK RSHMTTYSGS  60
TSNLEGCCDV ETGNANGEEE LSDDGSTQIG EKKRRLSVEQ VKALEKSFEI GNKLEPERKM  120
QLAKTLNLQP RQVAIWFQNR RARWKTKQLE KDYDVLRRQF ENLKAENEIL RAQNQEMHAQ  180
LVALKSREPT ESINLNKETE GSCSNRSDNS SSNIGLDISA APPDIDSPLA AKPPPSTGIH  240
FFPPSSAGAT ATATTATTMQ FFQGSSSGVK DENSISNMFC NIDVDQSGFW RWLPQPQFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010532854.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010532854.10.0PREDICTED: homeobox-leucine zipper protein ATHB-13-like
SwissprotQ8LC031e-135ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLD7KXJ41e-133D7KXJ4_ARALL; ATHB13
STRINGXP_010532854.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26332770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-106HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]