PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010532500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | FAR1 | ||||||||
Protein Properties | Length: 838aa MW: 97276.3 Da PI: 7.3941 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86.8 | 3.3e-27 | 77 | 164 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++ ++r+++ ++t+Cka+++vk++ dgkw ++++ + HnHel p XP_010532500.1 77 SFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESESG---NSRRSSLKKTDCKASMHVKRRPDGKWIIHEFIKGHNHELLP 164 5***************************************9998877...889999********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-24 | 77 | 164 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.7E-26 | 285 | 378 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.099 | 565 | 601 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.7E-7 | 566 | 600 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.1E-7 | 576 | 603 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 838 aa Download sequence Send to blast |
MRRILVNPNV ADFRMDSQEN RVNGNGDENM VDIVDESQNR DVGNVHDPKA GGLGTSGDVD 60 LEPRDGIEFD SHEAAYSFYQ EYAKSMGFTT SIKNSRRSKK TKEFIDAKFA CSRYGVTPES 120 ESGNSRRSSL KKTDCKASMH VKRRPDGKWI IHEFIKGHNH ELLPALAYHF RIQRNVKLAE 180 KNNIDILHAV SERTKKMYVE MSRHSGGLKK IELPQSEIDS QLDDMGRYLV MEEGDSQVML 240 EYFKRIKKEN PKFFYAIDLN EEQRLRNLCW VDAKSRDDYT SFSDVVSFDT TYVKFNEKLP 300 LALFVGVNHH FQPMLLGSAL VADESKETFV WLLKTWLRAM GGRAPKVILT DQDKVLMAAI 360 SEVLPNTHHC FALWHVLEKI PESFSHVMKR HENFLRKFNK CVFRSWTDDQ FDMRWWKMVT 420 RFELQDDEWI QWLYEHRKKW VPTFMSNVFL AGMSTSPRSE SMNSFFDKYI HKKIRLREFI 480 KQYGAILQNR YEEESVADFD TWHKQPALKS PSPWEKQVSA VYTHTIFKKF QVEVLGVVAC 540 HPKKESEDET MLTFRVQDCE KEDEFLVTWN KANSELCCFC RMFEYKGFLC RHALMVLQIC 600 GFPSIPPQYV LKRWTKDAKS RQPSEEVTDQ FQTGRVQRYN DLCRRAIELS EEGCLSEENY 660 NIVLRTLVET LKNCVDLNNS RSNILESNSQ PHNPGEEENQ AIASAKSSKK KTIVRKRKGQ 720 PEADQMLIEP QPNLQQMDNL SSEGMNLNGF YGTQQNVQGL LNLMEPPHEG YFVNQRSIQG 780 LGQLNSIAPV HESFFTNQQA IPGLAQLDFR PPPTSFSYIQ DEHHLRSAQL PSSSSRHI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00434 | DAP | Transfer from AT4G15090 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010532500.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010532500.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 | ||||
Refseq | XP_010532501.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 | ||||
Swissprot | Q9SWG3 | 0.0 | FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | A0A1J3EF67 | 0.0 | A0A1J3EF67_NOCCA; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | A0A1J3JL92 | 0.0 | A0A1J3JL92_NOCCA; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
STRING | XP_010532500.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 0.0 | FAR1 family protein |