PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010532006.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family G2-like
Protein Properties Length: 305aa    MW: 34339.8 Da    PI: 7.4754
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010532006.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.28.7e-342680155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  XP_010532006.1 26 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 80
                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3472383IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-322381IPR009057Homeodomain-like
SuperFamilySSF466891.25E-162581IPR009057Homeodomain-like
TIGRFAMsTIGR015578.6E-242681IPR006447Myb domain, plants
PfamPF002498.8E-82878IPR001005SANT/Myb domain
PfamPF143799.6E-21122162IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSCSSHEARH NCVQGDSGLV LTTDPKPRLR WTVELHERFV DAVTQLGGPD KATPKTIMRV  60
MGVKGLTLYH LKSHLQKFRL GKQPHKEYND HSAKDGSRAS ALGLQRNAAS SSGMMMRHDM  120
NEMQMEVQRR LYDQLEVQRH LQLRIEAQGK YMQSILEKAC QTLAGETMAA RGEVYKEDLA  180
VASLSFPPFQ DLNKYVDTDK IDHHYYNIYS GKKRPNPFGS DAEKSLLMWP EDHFRLHDLG  240
GPPTSSSCRQ LDEHQIQIQM ASHVSADLDS PSDIYDGTSW LSIDGLSIKK FEASGGKALE  300
RPSVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-182682258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-182682258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-182682157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-182682157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-182682157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-182682157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-182682258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-182682258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-182682258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-182682258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-182682258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-182682258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010532006.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010532006.10.0PREDICTED: myb family transcription factor APL-like
SwissprotQ9SAK51e-131APL_ARATH; Myb family transcription factor APL
TrEMBLA0A1J3CI771e-132A0A1J3CI77_NOCCA; Myb family transcription factor APL
STRINGXP_010532006.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50442750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.21e-133G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]