PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010531868.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 638aa    MW: 70739.2 Da    PI: 6.5815
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010531868.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-08535583348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +W+  E  +lv++v+++G g W+ I r        Rt  ++k++w+++l
   XP_010531868.1 535 AWSLSEVIKLVEGVAKYGAGKWSEIKRLSFashSYRTSVDLKDKWRNLL 583
                      7***************************999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.903528587IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.3E-13529589IPR009057Homeodomain-like
SuperFamilySSF466891.25E-15530591IPR009057Homeodomain-like
SMARTSM007174.9E-9532585IPR001005SANT/Myb domain
CDDcd116602.13E-19534584No hitNo description
PfamPF002493.6E-6535583IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MRLSASDNGM FSDNSAQTMG TSFSLTKQSG NPVKYKLVRV AGDGRLVPAT DEEIIEVEDL  60
LENDETDMHI VTHTGQTVED ISDDRLPSRL PLLESSEATN LGLSQSDNTE ASPDKLASQL  120
EYTVEMLQRV EEEVRLCMAH EPQMLSACSD ANIQCSNESN KLFSSDVKVQ SETLLQDLTQ  180
DQNGCGSNQQ MKAEPCLNVV GSPQEAVFST SAQKPDFSTV RGDICLDNLS IKALHETFRA  240
TFGRETTVKD KLWLKRRIAM GLLNSCYVST TCLTIKDNKL IGGQKENFNC LNDDFSKDVV  300
DEIRVDDSNK EAASGPSDQI DGFASASGDS SMDNFGNHEC GGEDFASEHR AEKRQRKPTR  360
RYIEELSDTD DRQRSGKSMN PSKNQRLSPK SQIKTIRAVS SGGRLVITRV VYLAGSRMQV  420
PFVFQTRRGR PRENIMALVD IQPGWLEEKA TPAGNSQRLS PSQLNGDNVN GGLIIKSAFE  480
HGQKESKNEH SNSVPTVLDR DMEPEQVELS GNSSDENHVG MPTFNSALRR KHHRAWSLSE  540
VIKLVEGVAK YGAGKWSEIK RLSFASHSYR TSVDLKDKWR NLLKASFSQT PSKRMGSMRK  600
HGSTPIPTPI LLRVRELAEK QSQVPAVSKA KDKRTGFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010531868.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531868.10.0PREDICTED: uncharacterized protein LOC104808052 isoform X1
TrEMBLV4KKV40.0V4KKV4_EUTSA; Uncharacterized protein
STRINGXP_010531868.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.20.0TRF-like 6