PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010531697.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 421aa    MW: 47262.9 Da    PI: 9.0622
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010531697.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.9e-067294123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C++ F r  nL+ H r+H
  XP_010531697.1 72 YVCEICNQGFQRDQNLQMHRRRH 94
                    9*********************9 PP
2zf-C2H214.69.6e-05150172123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+k +  +s++k H++t+
  XP_010531697.1 150 WVCERCSKGYAVQSDYKAHLKTC 172
                     58*******************98 PP
3zf-C2H2110.0013180198523
                     TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                     dCg++Fsr +++  H+ t+
  XP_010531697.1 180 DCGRVFSRVESFIEHQDTC 198
                     9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.98E-56995No hitNo description
Gene3DG3DSA:3.30.160.601.7E-57194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.977294IPR007087Zinc finger, C2H2
SMARTSM003550.00527294IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM0035581114144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.8E-4141171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355100150177IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.58170209IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MIDYDTNNNE NDSNNNHRNA PSSSSSDLLL LDSNGASSAA TQKRKRRPAG TPDPDAEVVS  60
LSPRTLLESD RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKRENNQEVR KRVYVCPEPT  120
CLHHDPSHAL GDLVGIKKHF RRKHSNHKQW VCERCSKGYA VQSDYKAHLK TCGTRGHSCD  180
CGRVFSRVES FIEHQDTCTA QRVHPPQHPV AAPAMSSRTA PSTEADLNIG PFLSGLPVLR  240
QPPPSDRQRS RLLYSFDRRA RNHNLELQLL PSRSAEETHE TSLKLSIGMA TTSSDVVQRK  300
NSYEKGETSV KDRANEQLKL AEEARREAKR QIEMAEIEFE NAKRIRRQAQ TELGKAQILR  360
EQATQRISAT MVRITCHSCK QKFQAPVATE APAPGAPPSC GEDSTSLAVS YVSSATTGEG  420
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-18148200557Zinc finger protein JACKDAW
5b3h_F3e-18148200557Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010531697.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531697.10.0PREDICTED: protein indeterminate-domain 14-like
SwissprotQ9C9X70.0IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLD7KVR70.0D7KVR7_ARALL; Atidd14-domain 14
STRINGXP_010531697.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-170indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  2. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]