PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010531317.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 282aa    MW: 30400.8 Da    PI: 8.2127
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010531317.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74.1e-18120174256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Lee F+++++++ +++  LA++l+L  rqV vWFqNrRa+ k
  XP_010531317.1 120 RKKLRLTKEQSALLEESFKQHSTLNPKQKLALARQLNLRPRQVEVWFQNRRARTK 174
                     788899***********************************************98 PP
2HD-ZIP_I/II125.32.7e-40120209191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+keq++lLEesF+++++L+p++K +lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
  XP_010531317.1 120 RKKLRLTKEQSALLEESFKQHSTLNPKQKLALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 209
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.184116176IPR001356Homeobox domain
SuperFamilySSF466892.18E-18118184IPR009057Homeodomain-like
SMARTSM003891.6E-15118180IPR001356Homeobox domain
PfamPF000461.3E-15120174IPR001356Homeobox domain
CDDcd000864.51E-16120177No hitNo description
Gene3DG3DSA:1.10.10.603.2E-17120174IPR009057Homeodomain-like
PROSITE patternPS000270151174IPR017970Homeobox, conserved site
PfamPF021835.4E-10176210IPR003106Leucine zipper, homeobox-associated
SMARTSM003405.7E-26176219IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGVDDSCNNA GLVLGLGLTP TNSNYNHAIK RSSPNVVDRQ SLDPSLTLSL SGXEEPSAGG  60
GDYQLCRQAS SHSGVSSFSS GRVKRERDVS GGGGEEAETE TERMSSRVSD QEDEEGVSAR  120
KKLRLTKEQS ALLEESFKQH STLNPKQKLA LARQLNLRPR QVEVWFQNRR ARTKLKQTEV  180
DCEFLKKCCE TLTDENRRLQ KELQELKALK LAQPFYMHMP AATLTMCPSC ERLSGGSVAG  240
GGGSGGGVTS AVVDSAGAKV AAFSIAAKPH FFNPFTNPSA AC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168176RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010531317.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531317.20.0PREDICTED: LOW QUALITY PROTEIN: homeobox-leucine zipper protein HAT22
SwissprotP466041e-128HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A1J3JVW81e-126A0A1J3JVW8_NOCCA; Homeobox-leucine zipper protein HAT22
STRINGXP_010531317.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-111HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]