PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010531031.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 243aa    MW: 26639 Da    PI: 6.6385
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010531031.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.5e-20106140135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  XP_010531031.1 106 CANCDTTTTPLWRNGPRGPKSLCNACGIRFKKEER 140
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.4E-18100151IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.075100136IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-14101143No hitNo description
Gene3DG3DSA:3.30.50.107.9E-17104140IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.90E-15105137No hitNo description
PfamPF003204.7E-18106140IPR000679Zinc finger, GATA-type
PROSITE patternPS003440106131IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MMGMFSSTSY QENPSFSMFF PSENDDVFDH KDDPYSSVDC TLSLGTPSTR LITEEDHHKR  60
RFSSSSTPAF GPDLLHGRNS KTASHMPQHS HRSNGRGGDP GLARRCANCD TTTTPLWRNG  120
PRGPKSLCNA CGIRFKKEER RATAGKATSG GVSSEAAAAV GGVPMSDHQM YNTGSNYNYN  180
QYYDSSSSSS TWHHHATQGV PCSYYSPAAN DHIFVEDIRD CDSDATAAAS FLPWRLDVAD  240
QLY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:23335616, PubMed:25077795). {ECO:0000250, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:25077795}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010531031.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by HAN. {ECO:0000269|PubMed:23335616}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531031.10.0PREDICTED: GATA transcription factor 19-like
SwissprotQ6QPM23e-57GAT19_ARATH; GATA transcription factor 19
TrEMBLA0A3P6B1R14e-61A0A3P6B1R1_BRAOL; Uncharacterized protein
STRINGXP_010531031.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.15e-51GATA transcription factor 20
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]