PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010530809.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 273aa    MW: 31031.5 Da    PI: 5.1553
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010530809.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.3e-17189222134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs+Cg+ +Tp+WR gp g+ktLCnaCG++y++ +
  XP_010530809.1 189 CSHCGANSTPQWRTGPLGPKTLCNACGVRYKSGR 222
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.23E-13182240No hitNo description
SMARTSM004011.3E-11183237IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.084187225IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-13187225IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.23E-13188225No hitNo description
PfamPF003203.8E-15189223IPR000679Zinc finger, GATA-type
PROSITE patternPS003440189214IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MMEKWTEARA LKPSLIRGEP TTAKPPQSAV SDELLSRVSS VEDFSVECFL DLSEEEDDLL  60
VHEGVDDDDD DDDDEGQELV SLCSSQEEQA ESEPFLLDQW PIPEEDMAEL EWVSRVMDDD  120
YSSLIFTERK PQEAGRRWDH HSRKPCFSFR VPVKPRSKRS RNGKTRQPIW PFLKPRPTKQ  180
PESMFQRRCS HCGANSTPQW RTGPLGPKTL CNACGVRYKS GRLCREYRPA CSPTFSSGIH  240
SNVHRKVLEL RKMNESSANQ TESNSAGGGA TLR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010530809.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010530809.10.0PREDICTED: GATA transcription factor 3
SwissprotQ8L4M64e-73GATA3_ARATH; GATA transcription factor 3
TrEMBLA0A078I5Y44e-78A0A078I5Y4_BRANA; GATA transcription factor
TrEMBLA0A3P6A4J14e-78A0A3P6A4J1_BRACM; GATA transcription factor
TrEMBLM4DMD74e-78M4DMD7_BRARP; GATA transcription factor
STRINGXP_010530809.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57392647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34680.26e-72GATA transcription factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]