PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010530617.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 791aa MW: 86348.2 Da PI: 4.8705

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010530617.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	382	405	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC++C+ +F +++ + +H+ + H XP_010530617.1 382 FKCQKCNSTFDTNDAYLQHLISvH 405 89*****************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	3.92E-5	271	320	IPR016177	DNA-binding domain
PROSITE profile	PS50157	9.224	382	410	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	384	405	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 791 aa Download sequence Send to blast
MATMAPEYPP HSTQTLDQLS FIDLSTLTQS ELLALSRCSS VTASAANCFP GDTAVASIDR 60 SAFNESVGSR RQTFCRLGPS SPSSSVHHRS RVAVAGRLSS SSAKSLAVSD AGVADASGDP 120 HHGENRRIIA NLKQSLRNLP EFYDIDFDYV PPCSFTNPTL SLCDGGGERK RKRGRKPKPK 180 PENFKPEIQK PVSVTVAGNE DPETGLESVN KNGVRVDLAA LSTLEDPYGP EIRRRTEGLC 240 GEEELLGFLS SLGGEWCSRR RKRKIVDAGV LGDFLPVGWK LLLALKRKER RAWVYCRRIV 300 SPGGRHLLSC KEVSEYLRSY FESHGEPSRV NHDRSTVHPD GPQSVSQINQ DANCSEDPRK 360 YHSLMTVSNN DNLKVIQVQN LFKCQKCNST FDTNDAYLQH LISVHQENTK RCKLGSSVEG 420 GQTITNGNRD EGVEQQYDQL GFQQTIEPTI KDDLGMRISR MDALIEIAHN SMLETSSAPP 480 TEATERLIMF DELNLVSEGK RSVSDSEHEM ISPIGVETED GLTITNLDQG FPGEINGNTA 540 TGEKVEILEH VTNFMDIETG SHRSEAFPGK HGFGGAANGT EESVFGNKPA DEICLAIPTE 600 NQEALGVSLA SSSGDGGVNN EQSGLMRMDF RLTNDTAPIQ DSIQFQLQPT QNLQTYDNVS 660 KGEDKPFSIN PSNELQLEYM ESLKLNFVGG TDMSLVPMGL EENTAMVEEE TAYGSAPQFQ 720 SQEVVLGMTG GGSGNNLTTI CMWCGIEFSH VLSDSEPRSD SVGYMCLACK ARISGQMGTP 780 DAHPPPTSTI F

Sequence ? help Back to Top

Protein Sequence Length: 791 aa Download sequence Send to blast

MATMAPEYPP HSTQTLDQLS FIDLSTLTQS ELLALSRCSS VTASAANCFP GDTAVASIDR  60
SAFNESVGSR RQTFCRLGPS SPSSSVHHRS RVAVAGRLSS SSAKSLAVSD AGVADASGDP  120
HHGENRRIIA NLKQSLRNLP EFYDIDFDYV PPCSFTNPTL SLCDGGGERK RKRGRKPKPK  180
PENFKPEIQK PVSVTVAGNE DPETGLESVN KNGVRVDLAA LSTLEDPYGP EIRRRTEGLC  240
GEEELLGFLS SLGGEWCSRR RKRKIVDAGV LGDFLPVGWK LLLALKRKER RAWVYCRRIV  300
SPGGRHLLSC KEVSEYLRSY FESHGEPSRV NHDRSTVHPD GPQSVSQINQ DANCSEDPRK  360
YHSLMTVSNN DNLKVIQVQN LFKCQKCNST FDTNDAYLQH LISVHQENTK RCKLGSSVEG  420
GQTITNGNRD EGVEQQYDQL GFQQTIEPTI KDDLGMRISR MDALIEIAHN SMLETSSAPP  480
TEATERLIMF DELNLVSEGK RSVSDSEHEM ISPIGVETED GLTITNLDQG FPGEINGNTA  540
TGEKVEILEH VTNFMDIETG SHRSEAFPGK HGFGGAANGT EESVFGNKPA DEICLAIPTE  600
NQEALGVSLA SSSGDGGVNN EQSGLMRMDF RLTNDTAPIQ DSIQFQLQPT QNLQTYDNVS  660
KGEDKPFSIN PSNELQLEYM ESLKLNFVGG TDMSLVPMGL EENTAMVEEE TAYGSAPQFQ  720
SQEVVLGMTG GGSGNNLTTI CMWCGIEFSH VLSDSEPRSD SVGYMCLACK ARISGQMGTP  780
DAHPPPTSTI F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	167	176	ERKRKRGRKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010530617.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010530617.1	0.0	PREDICTED: uncharacterized protein LOC104807164 isoform X2
STRING	XP_010530616.1	0.0	(Tarenaya hassleriana)