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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010530521.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | E2F/DP | ||||||||
Protein Properties | Length: 403aa MW: 44643 Da PI: 5.4806 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 86.5 | 2e-27 | 144 | 209 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+lltqkf++l++++++g+++ln +ak L +v ++RRiYDi+NVLe+++liek+ kn+irwkg XP_010530521.1 144 RYDSSLGLLTQKFISLIQETKDGTLDLNYCAKVL---EV--QKRRIYDITNVLEGIGLIEKTTKNHIRWKG 209 6899******************************...99..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.8E-28 | 141 | 211 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.63E-17 | 144 | 207 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 3.6E-33 | 144 | 209 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 5.7E-25 | 146 | 209 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 2.86E-39 | 218 | 323 | No hit | No description |
SuperFamily | SSF144074 | 4.71E-28 | 219 | 323 | No hit | No description |
Pfam | PF16421 | 8.3E-26 | 223 | 322 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MAAASNSGED PSLTYHRSPF RFQLLQSLYC DPLLSPPPPT TTNCLFPISS PPSSIAQPPN 60 PSSDHCPSHS YDKTFCNGIS SGESRKVAMV PVKLEYPDGK KLESPCEGFG KQAKKAKSLK 120 QSKAGYRKAN AECPSGLNAA NHCRYDSSLG LLTQKFISLI QETKDGTLDL NYCAKVLEVQ 180 KRRIYDITNV LEGIGLIEKT TKNHIRWKGP DSFANLESQM SKLESEVASL HSEEKQLDDR 240 IRERKEALRA FGEDENCRRN LFVTEEDIMS LPCFQNQMLL AVKAPVASSI EVPDPDEDIS 300 FPQPQYRMVV RSTMGPIDVY LISGHKREEG DTTDKLSEQS DQLSHNHASL ALSPGRGENQ 360 CNNSQSSTPS ASGIQKIVTA DTDINADYWF QSDSEVSLTD LWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 3e-23 | 144 | 209 | 7 | 73 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in transcriptional repression. May act by repressing E2F-regulated genes in mature differentiated cells, but is not an antagonist of E2FA. Restricts cell division and is involved in the coordination between cell proliferation and endoreduplication during development. May play a role during the transition from skotomorphogenesis to photomorphogenesis. Regulated by phosphorylation-dependent proteolysis via the protein-ubiquitin ligase SCF(SKP2A) complex. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12468727, ECO:0000269|PubMed:16920782, ECO:0000269|PubMed:19662336}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010530521.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by light. {ECO:0000269|PubMed:12468727, ECO:0000269|PubMed:18424613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010530521.1 | 0.0 | PREDICTED: transcription factor E2FC-like | ||||
Swissprot | Q9FV70 | 1e-135 | E2FC_ARATH; Transcription factor E2FC | ||||
TrEMBL | A0A1J3EBW6 | 1e-133 | A0A1J3EBW6_NOCCA; Transcription factor E2FC (Fragment) | ||||
TrEMBL | A0A1J3HJH1 | 1e-133 | A0A1J3HJH1_NOCCA; Transcription factor E2FC (Fragment) | ||||
STRING | XP_010530521.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM808 | 28 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G47870.2 | 1e-129 | E2F/DP family protein |
Publications ? help Back to Top | |||
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