PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010530389.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 304aa    MW: 34576.3 Da    PI: 9.9271
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010530389.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.91.7e-3081131151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                     krien++nrqvtf+kRrng+lKKA+ELSvLCd+eva+++fs +g+lyeys+
  XP_010530389.1  81 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDVEVALLVFSARGRLYEYSN 131
                     79***********************************************95 PP
2K-box97.61.9e-321482453100
           K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     +s+g s++e ++++++qe+akL+++i  +q+++R++lGe + s++ keL++Le++Le+++++iRskKne+l ++ie+++k+e +l ++n+ L +k
  XP_010530389.1 148 DSDGGSVSEINTQYYKQESAKLRQQILGIQKSNRQMLGETIASMTPKELRNLETKLETGISRIRSKKNEMLSAEIEHMRKREVDLYNDNNLLLAK 242
                     56677899**************************************************************************************9 PP

           K-box  98 lee 100
                     ++e
  XP_010530389.1 243 VAE 245
                     986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.22673133IPR002100Transcription factor, MADS-box
SMARTSM004327.3E-3973132IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-3274145IPR002100Transcription factor, MADS-box
CDDcd002655.11E-4374150No hitNo description
PROSITE patternPS00350075129IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-317595IPR002100Transcription factor, MADS-box
PfamPF003197.9E-2682129IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-3195110IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-31110131IPR002100Transcription factor, MADS-box
PfamPF014863.2E-24158243IPR002487Transcription factor, K-box
PROSITE profilePS5129714.518159249IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEHFLHLLCK TLPFHIYSAT SPSIPHFPSF SREKKINQGK GPFPPFCSSP HSSATTAYRT  60
ELGSDQTSPQ RKSGRGKIEI KRIENTTNRQ VTFCKRRNGL LKKAYELSVL CDVEVALLVF  120
SARGRLYEYS NHSVKATIER YKKAVSDDSD GGSVSEINTQ YYKQESAKLR QQILGIQKSN  180
RQMLGETIAS MTPKELRNLE TKLETGISRI RSKKNEMLSA EIEHMRKREV DLYNDNNLLL  240
AKVAENERNH LSMMSMIMPG MGGSNYNEGR SQPLDSRGYF HVAALQPNHH HFSDKQDLTP  300
LQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-1874141269Myocyte-specific enhancer factor 2B
1tqe_Q2e-1874141269Myocyte-specific enhancer factor 2B
1tqe_R2e-1874141269Myocyte-specific enhancer factor 2B
1tqe_S2e-1874141269Myocyte-specific enhancer factor 2B
6c9l_A2e-1874141269Myocyte-specific enhancer factor 2B
6c9l_B2e-1874141269Myocyte-specific enhancer factor 2B
6c9l_C2e-1874141269Myocyte-specific enhancer factor 2B
6c9l_D2e-1874141269Myocyte-specific enhancer factor 2B
6c9l_E2e-1874141269Myocyte-specific enhancer factor 2B
6c9l_F2e-1874141269Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the control of organ identity during the early development of flowers. Is required for normal development of stamens and carpels in the wild-type flower. Plays a role in maintaining the determinacy of the floral meristem. Acts as C class cadastral protein by repressing the A class floral homeotic genes like APETALA1. Forms a heterodimer via the K-box domain with either SEPALATTA1/AGL2, SEPALATTA2/AGL4, SEPALLATA3/AGL9 or AGL6 that could be involved in genes regulation during floral meristem development. Controls AHL21/GIK, a multifunctional chromatin modifier in reproductive organ patterning and differentiation (PubMed:19956801). Induces microsporogenesis through the activation of SPL/NZZ (PubMed:15254538). {ECO:0000269|PubMed:15254538, ECO:0000269|PubMed:19956801}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010530389.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by the A class floral homeotic protein APETALA2 and by other repressors like LEUNIG, SEUSS, SAP or CURLY LEAF. Positively regulated by both LEAFY and APETALA1. Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. Up-regulated by HUA2. {ECO:0000269|PubMed:10198637, ECO:0000269|PubMed:11058164, ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:17794879, ECO:0000269|PubMed:18281509, ECO:0000269|PubMed:19783648, ECO:0000269|PubMed:9783581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010530389.10.0PREDICTED: floral homeotic protein AGAMOUS-like
SwissprotP178391e-127AG_ARATH; Floral homeotic protein AGAMOUS
TrEMBLD7M9D01e-126D7M9D0_ARALL; Uncharacterized protein
STRINGXP_010530389.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61812237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-118MIKC_MADS family protein
Publications ? help Back to Top
  1. Huang Z, et al.
    APETALA2 antagonizes the transcriptional activity of AGAMOUS in regulating floral stem cells in Arabidopsis thaliana.
    New Phytol., 2017. 215(3): p. 1197-1209
    [PMID:27604611]
  2. Rong XF, et al.
    Type-B ARRs Control Carpel Regeneration Through Mediating AGAMOUS Expression in Arabidopsis.
    Plant Cell Physiol., 2018. 59(4): p. 756-764
    [PMID:29186581]
  3. Uemura A, et al.
    Regulation of floral meristem activity through the interaction of AGAMOUS, SUPERMAN, and CLAVATA3 in Arabidopsis.
    Plant Reprod, 2018. 31(1): p. 89-105
    [PMID:29218596]