PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010530332.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

M-type_MADS

Protein Properties

Length: 214aa MW: 24034.8 Da PI: 5.9726

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010530332.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	39.2	9.1e-13	22	62	10	50
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 + f +R +++ K ELSvLCd+ v+vi + s+g+ly ++ XP_010530332.1 22 KAAFQRRVQTLKNKDRELSVLCDIFVCVICYDSDGQLYHWP 62 56799999********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00319	7.3E-11	19	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.4E-14	19	95	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	9.741	21	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MGHRLRSTMA HGKPKFQTKA QKAAFQRRVQ TLKNKDRELS VLCDIFVCVI CYDSDGQLYH 60 WPERPEDVRR IAANYRGLSE EDRRKHAVDL NGFLSSEATK ANRASKKPRL APAYPDSDGT 120 VDNLSHDELG VLLSRIDAKL VQFQERQSLV MDHGGRTEKD FEGRNEDVGS EKSATGPRGE 180 ENTDEIDIFG GLEDLDCGFQ GFGFESFGGS SMYI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010530332.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010530332.1	1e-159	PREDICTED: agamous-like MADS-box protein AGL103
STRING	XP_010530332.1	1e-159	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	4e-22	AGAMOUS-like 103