PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010530182.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 368aa    MW: 39980.4 Da    PI: 4.8247
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010530182.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.80.0001310351854
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +E+ R ++i + ++ Lr ++P        K + + +L +A++Y+ksL
  XP_010530182.1 310 NEKIRKEKISETLSLLRGIVPGG-----DKEDPILVLDRAIDYLKSL 351
                     7********************95.....59999************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.338302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-8308358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-5311359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.86E-5311356No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGKDRGLWFP PHQSFGPLSP GLNPSSTLSH SGHQDTNLGT ENFAANMVTV CGSSPVYAQL  60
PLSHVGDGDK SHGSVYGLPN LQPSSLATPK KPCLKQISSA VLFRNQVEAA MPKAGCECAP  120
KRFLVFDQSG DQTTLIFSSD IGKPFEGLTT ATAQDMKRSL LRTSDDLVVH QGMVAREVLA  180
DNSKPDVQSE MHEDTEELNA LLFSDDESEY SDEEDEVTSS GHSPSTISDH VNEEEAASIG  240
STDGISAFVR HSQATKRKLF ERYDNGTRTM PPRDTSNSPK RNRLCFEDGN DAESSCGNTG  300
YVTRFLPPNN EKIRKEKISE TLSLLRGIVP GGDKEDPILV LDRAIDYLKS LKMEAETLGL  360
ESSGSLKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010530182.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010530182.10.0PREDICTED: transcription factor bHLH145
STRINGXP_010530182.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1053059
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.24e-08bHLH family protein