PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010530169.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 393aa    MW: 42205.4 Da    PI: 4.8022
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010530169.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.5e-18201250255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+ ae Aa a++aa+++++g
  XP_010530169.1 201 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDPAESAAMAYDAAALRFRG 250
                     7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.684201258IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22201259IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-31201259IPR001471AP2/ERF domain
PfamPF008471.8E-12201250IPR001471AP2/ERF domain
SMARTSM003801.3E-34201264IPR001471AP2/ERF domain
PRINTSPR003671.0E-13202213IPR001471AP2/ERF domain
CDDcd000181.08E-15209260No hitNo description
PRINTSPR003671.0E-13240260IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSMIIYIYHD FNAKDGAKLA SFKSLLLFKV ANQEEHDFYA TTFTAAAAED DPPPENTGGS  60
AADMYGFEQD PVVGRYNRFG TEMSAMVSAL TQVVSARETS TTTAAVAVDG GGGGGGGSSS  120
CPLSDYGLWV GQKRGRHEDD SPAMTSSCVG GDSSAGGIGG RESITMAPPP PPTSTNFPAT  180
DPPESSAFPY QETGDIDTRR RYRGVRQRPW GKWAAEIRDP HKAARVWLGT FDPAESAAMA  240
YDAAALRFRG NKAKLNFPEN VRILPPPLPP HSASPPQAPV DKALTDYWRY SQLLQSSGDF  300
YNLQIPFFRR GQEQGSSDML EQVVLQATRS PSSSSSSSST SSSSSSFASY PLVFPASDQT  360
PPPSERIFRA PENQNSQTSF SDLDKPSNTD SGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-22200261466ATERF1
3gcc_A4e-22200261466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010530169.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010530169.10.0PREDICTED: ethylene-responsive transcription factor ERF110
SwissprotQ70II33e-40EF110_ARATH; Ethylene-responsive transcription factor ERF110
STRINGXP_010530169.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.19e-37ethylene response factor 110