PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010530023.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 128aa    MW: 14488.2 Da    PI: 8.2285
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010530023.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-054365123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C + F++   L  H+++H
  XP_010530023.1 43 YTCNFCRREFRSAQALGGHMNVH 65
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.57E-74070No hitNo description
Gene3DG3DSA:3.30.160.604.3E-44167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.0E-54366IPR007087Zinc finger, C2H2
SMARTSM003550.00734365IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1984370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MWNPRNYHKK DDWEDDDESW EVKAFEQDMK GNMAGTTWPP RSYTCNFCRR EFRSAQALGG  60
HMNVHRRDRA ARAPTPPAAR ACNSCAPPFP TLVIQPTAES LCHFYQLPNP SGIFVGFSRG  120
HATASGIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-133865229superman protein
2l1o_A2e-133865229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010530023.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010530023.18e-94PREDICTED: uncharacterized protein LOC104806701 isoform X2
SwissprotO809422e-20ZFP10_ARATH; Zinc finger protein 10
TrEMBLA0A1P8B4M54e-51A0A1P8B4M5_ARATH; C2H2 and C2HC zinc fingers superfamily protein
TrEMBLO236214e-51O23621_ARATH; SUPERMAN like protein
STRINGXP_010530022.11e-82(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.13e-40C2H2 family protein