PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010530009.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 271aa MW: 30858.7 Da PI: 10.6771

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010530009.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.3	3e-32	178	231	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+av+ LGG+e+AtPk++lelm+v++Ltl+hvkSHLQ+YR+ XP_010530009.1 178 PRMRWTTTLHARFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRT 231 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.72E-15	175	232	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-28	176	232	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.8E-24	178	232	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-7	179	230	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MELFPSEPDL YLQIGPPNSK TSLECGRREE QVEMRLGFWS KPSHSDRTSS SLVSRALNTA 60 HRHPHHFTTI NQSTNCFLHP FHQQPQENKT LYDQDQDLRS ILMRPIRGVP IHQNHLYIQS 120 FLPSASPTPF FRGKNRNVAS NFNPGFHHGH RYQATVNRAS SSPRFTSKFM ERRGVRAPRM 180 RWTTTLHARF VHAVQLLGGH ERATPKSVLE LMDVQDLTLA HVKSHLQMYR TIKSAEKGSD 240 DACGNGSSGG NCEGQKQKGR NLQGLWNNSS R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-16	179	233	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	179	233	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	179	233	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	179	233	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development. {ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:17307928}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010530009.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010530009.1	0.0	PREDICTED: probable transcription factor KAN3
Swissprot	Q941I2	2e-70	KAN3_ARATH; Probable transcription factor KAN3
TrEMBL	D7M9G7	2e-72	D7M9G7_ARALL; Uncharacterized protein
STRING	XP_010530009.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17695.1	6e-71	G2-like family protein