PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529425.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 730aa    MW: 80450.8 Da    PI: 5.6837
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529425.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.3e-1962117156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++eLe++F+++++p+ ++r+eL+++l L+  q+k+WFqN+R+++k
  XP_010529425.1  62 KKRYHRHTQRQIQELEAFFKECPHPDDKQRKELSRELALEPLQIKFWFQNKRTQMK 117
                     688999***********************************************998 PP
2START221.52.7e-692524711206
                     HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     ela +a++el ++a+a+ep+Wv+     e++n++e+ ++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW+  +     +a tle
  XP_010529425.1 252 ELAVAAMEELGRMAQAGEPLWVSAEnsaEILNEEEYFRTFPRGIGpkplgMRSEASRESAVVIMNHINLVEILMDVN-QWSCIFSgivsRALTLE 345
                     57899*******************9999**************999********************************.***************** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     v+s+g      galq+m+ae+q++splvp R+ +fvRy++q+g+g+w++vdvS+d+ ++ p    + R++++pSg+li++++ng+skv+wvehv+
  XP_010529425.1 346 VLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHGDGKWAVVDVSLDNLRPSP----ISRCRRRPSGCLIQELPNGYSKVIWVEHVE 436
                     ***********************************************************99....6***************************** PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++r++h+++++lv+sgla+gak+wvatl+rqce+
  XP_010529425.1 437 VDDRSVHNMYKPLVQSGLAFGAKRWVATLDRQCER 471
                     *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-2244117IPR009057Homeodomain-like
SuperFamilySSF466895.01E-1851119IPR009057Homeodomain-like
PROSITE profilePS5007116.76359119IPR001356Homeobox domain
SMARTSM003896.4E-1760123IPR001356Homeobox domain
CDDcd000868.97E-1862120No hitNo description
PfamPF000461.9E-1662117IPR001356Homeobox domain
PROSITE patternPS00027094117IPR017970Homeobox, conserved site
PROSITE profilePS5084843.814243474IPR002913START domain
SuperFamilySSF559613.02E-35245473No hitNo description
CDDcd088751.85E-126247470No hitNo description
SMARTSM002343.8E-77252471IPR002913START domain
PfamPF018524.9E-58253471IPR002913START domain
Gene3DG3DSA:3.30.530.202.4E-5351472IPR023393START-like domain
SuperFamilySSF559615.06E-26488722No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MYHPNMFDSN HIFDMTPKSS DNELGINESR EEDLEAKSGT EVTTDNPLGE ELQDPNQRPN  60
KKKRYHRHTQ RQIQELEAFF KECPHPDDKQ RKELSRELAL EPLQIKFWFQ NKRTQMKAQH  120
ERHENQILKS DNDKLRAENN RYKEALNNAS CPNCGGPAAL GEMSFDEQHL RIENARLREE  180
IDRISAIAAK YVGKPLASSY PPLPSHVPSC SLDLEVGNFG NQAGFVGEMY GTGDILRSVS  240
IPSEADKPMI VELAVAAMEE LGRMAQAGEP LWVSAENSAE ILNEEEYFRT FPRGIGPKPL  300
GMRSEASRES AVVIMNHINL VEILMDVNQW SCIFSGIVSR ALTLEVLSTG VAGNYNGALQ  360
VMTAEFQVPS PLVPTRENYF VRYCKQHGDG KWAVVDVSLD NLRPSPISRC RRRPSGCLIQ  420
ELPNGYSKVI WVEHVEVDDR SVHNMYKPLV QSGLAFGAKR WVATLDRQCE RLPRRYXRSG  480
DLSVITSPEG RKSMLKLAER MAMSFCSGVG ASTAHAWTTL SATGSDDVRV MTRKSMDDPG  540
RPPGIVLSAA TSFWIPVSPK RIFDFLRDEN SRSEWDILSN GGLVQEMAHI ANGRDPGNCV  600
SLLRVNSGNS SQSNMLILQE SCADATGSYV IYAPVDIVAM NVVLSGGDPD YVALLPSGFA  660
ILPDGSGGGG EGNQEVDSSR VCGSLLTVAF QILVDSVPTA KLSLGSVATV NSLIKCTVER  720
IKAAVACDGA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529425.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019057303.10.0PREDICTED: LOW QUALITY PROTEIN: homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A3P6A9L90.0A0A3P6A9L9_BRACM; Uncharacterized protein
STRINGXP_010529425.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]