PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010529238.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | G2-like | ||||||||
Protein Properties | Length: 261aa MW: 29163.6 Da PI: 8.4359 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.7 | 2.2e-32 | 24 | 78 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+rFv+av++LGG++kAtPk++l+lm++kgLtl h+kSHLQkYRl XP_010529238.1 24 KPRLRWTAELHDRFVDAVTKLGGADKATPKSVLKLMGLKGLTLFHLKSHLQKYRL 78 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.163 | 21 | 81 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-31 | 21 | 82 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.42E-17 | 24 | 81 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.6E-24 | 24 | 79 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.4E-9 | 26 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.8E-14 | 128 | 170 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MEMMKLGGSI GYENGGVVMT RDPKPRLRWT AELHDRFVDA VTKLGGADKA TPKSVLKLMG 60 LKGLTLFHLK SHLQKYRLGQ QQAKKLNHAD DNKENAGSSY VHFNTHSQGD FSNLPRIDNQ 120 QRNIPFGESS RHQVEGQQKL RQQLEVQKKL QMRIEAQGKY LLALLDKAKT SFPTLANLPS 180 DAEATTGQFS DFNLTLEGSN DGEEKSQKVA SSTADTSNNS ESEDFGVCRE RENENSKSGY 240 DLMTLGNYGM EIKPNVFADR H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-19 | 24 | 77 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-19 | 24 | 77 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-19 | 24 | 77 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-19 | 24 | 77 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010529238.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010529238.1 | 0.0 | PREDICTED: myb family transcription factor PHL11-like isoform X1 | ||||
Swissprot | C0SVS4 | 1e-111 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A087GNV0 | 1e-111 | A0A087GNV0_ARAAL; Uncharacterized protein | ||||
STRING | XP_010529238.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12495 | 25 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 1e-105 | G2-like family protein |
Publications ? help Back to Top | |||
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