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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010529235.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | WRKY | ||||||||
Protein Properties | Length: 257aa MW: 29775.8 Da PI: 6.5827 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 73.4 | 2.9e-23 | 121 | 181 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD ++WrKYGqK++ s++pr+YYrCt++ +C+++k+v++ ++dp v +tY g+H+++ XP_010529235.1 121 DDDHSWRKYGQKNILRSKHPRNYYRCTHKyeqKCQATKQVQQMRDDPPVYRTTYYGNHTCR 181 8***************************99999*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-24 | 111 | 181 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 18.636 | 115 | 178 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.23E-23 | 118 | 181 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-32 | 120 | 182 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-23 | 121 | 181 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MSSSSENLGL EREKAMEELI RGRDCADRLR TAMENPSKTD KEDLLKKIVA SFTNTLSILR 60 RFDHFEEVSQ IPVGSSAPDS RKSDDSGESI RSSLPRNRRG CYKRRKHAHS WSREDSPSPF 120 DDDHSWRKYG QKNILRSKHP RNYYRCTHKY EQKCQATKQV QQMRDDPPVY RTTYYGNHTC 180 RDLHVAPHLF LHSPDRHDNP SLFLSFDQGN DGFTLPVKQE SDDLPPPLDE SDPTVLDSCT 240 ASFGFDDFMD DFSFDFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-22 | 120 | 181 | 8 | 69 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010529235.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010529235.1 | 0.0 | PREDICTED: probable WRKY transcription factor 70 | ||||
TrEMBL | A0A061EIE6 | 7e-71 | A0A061EIE6_THECC; WRKY DNA-binding protein 70, putative isoform 1 | ||||
STRING | XP_010529235.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16719 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 4e-42 | WRKY DNA-binding protein 70 |