PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010529021.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 222aa MW: 25327.4 Da PI: 6.9647

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010529021.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	85.2	1.3e-26	5	136	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkya.tgkrknratk....sgyWkatgkd 89 +G++F+P+d++l+ +L+ kv+g ++ ik+vd+y +ePw Lp+ + + +++ewy+F+k+ ++ + kr++r+++ g+Wk+t + XP_010529021.1 5 VGLKFRPNDKDLI-SHLRWKVNGGGDSF---IKDVDVYGSEPWLLPHVT-EplfQDNEWYYFVKKTIDSTrKRKRQSRQVQkkenGGTWKSTTGE 94 7**********.89*****655...***********533.2355999*999766552456677753334459***** PP NAM 90 kevlsk.kgelvglkktLvfykg..rapkgektdWvmheyrl 128 +e+ + + ++g + L+f ++ + k ktdW+m eyrl XP_010529021.1 95 EEIRDGgNAVVIGHARNLTFMENevGSTKQMKTDWLMREYRL 136 97555669*****6522566778*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	35.404	3	152	IPR003441	NAC domain
SuperFamily	SSF101941	7.45E-33	4	152	IPR003441	NAC domain
Pfam	PF02365	1.3E-15	5	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MGSIVGLKFR PNDKDLISHL RWKVNGGGDS FIKDVDVYGS EPWLLPHVTE PLFQDNEWYY 60 FVKKTIDSTR KRKRQSRQVQ KKENGGTWKS TTGEEEIRDG GNAVVIGHAR NLTFMENEVG 120 STKQMKTDWL MREYRLPSQE SQEWVVCRIR RKSNGRVNGD GRRMNQGNLG INSSIGQNVE 180 DAAFQPFANI VDDEYAWIQG LDIDELSSLL NEPFHGGALP LP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-14	6	154	20	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-14	6	154	20	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-14	6	154	20	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-14	6	154	20	167	NO APICAL MERISTEM PROTEIN
3swm_A	1e-14	6	154	23	170	NAC domain-containing protein 19
3swm_B	1e-14	6	154	23	170	NAC domain-containing protein 19
3swm_C	1e-14	6	154	23	170	NAC domain-containing protein 19
3swm_D	1e-14	6	154	23	170	NAC domain-containing protein 19
3swp_A	1e-14	6	154	23	170	NAC domain-containing protein 19
3swp_B	1e-14	6	154	23	170	NAC domain-containing protein 19
3swp_C	1e-14	6	154	23	170	NAC domain-containing protein 19
3swp_D	1e-14	6	154	23	170	NAC domain-containing protein 19
4dul_A	1e-14	6	154	20	167	NAC domain-containing protein 19
4dul_B	1e-14	6	154	20	167	NAC domain-containing protein 19

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010529021.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010529021.1	1e-165	PREDICTED: NAC domain-containing protein 6-like
STRING	XP_010529021.1	1e-164	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13336	4	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03490.1	7e-19	NAC domain containing protein 6