PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010528971.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C2H2 | ||||||||
Protein Properties | Length: 296aa MW: 32719.1 Da PI: 7.2652 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.3e-05 | 104 | 123 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F+r n++ H+ XP_010528971.1 104 FSCSVCSKTFNRFNNMQMHM 123 89*****************9 PP | |||||||
2 | zf-C2H2 | 13.3 | 0.00025 | 189 | 211 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ XP_010528971.1 189 FGCRKCGKAFAVRGDWRTHEKNC 211 56*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.66E-5 | 97 | 126 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.3E-5 | 104 | 123 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.201 | 104 | 131 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.29 | 104 | 126 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 106 | 126 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 180 | 152 | 184 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.95E-6 | 170 | 209 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.0E-6 | 175 | 209 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.58 | 189 | 209 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 97 | 189 | 209 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0010588 | Biological Process | cotyledon vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MGLNYQNGNE YNFSGDDESV VLRLGPPGQN HKPTTKKPSP TTNPNNISDD ANGVTVALHI 60 GPPSAAEKGS SGGSDVDGFT ATVLPRGQYW IPSLAQILVG PTQFSCSVCS KTFNRFNNMQ 120 MHMWGHGSQY RKGPESLRGT KSSSSILRLP CYCCAEGCKN NIEHPRSKPL KDFRTLQTHY 180 KRKHGAKPFG CRKCGKAFAV RGDWRTHEKN CGKLWFCVCG SDFKHKRSLK DHVKAFGDGH 240 APHTIGDRVV AIGGGEDDYD DDDGDGDEED DDCGDEDDDR GENYECFRRY GQFSRN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010528971.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019057093.1 | 0.0 | PREDICTED: zinc finger protein WIP6 | ||||
Swissprot | Q9FX68 | 1e-144 | ZWIP6_ARATH; Zinc finger protein WIP6 | ||||
TrEMBL | D7KQE1 | 1e-143 | D7KQE1_ARALL; Zinc finger family protein | ||||
STRING | XP_010528971.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13290.1 | 1e-138 | C2H2-like zinc finger protein |