PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010528939.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 353aa MW: 39057.7 Da PI: 6.3707

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010528939.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.4	1.1e-07	268	308	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A +Y+k L XP_010528939.1 268 ARHRRERISERIRVLQRLVPGG-----TKMDTASMLDEAANYLKFL 308 599***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.008	259	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-13	264	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-12	265	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-11	265	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-5	269	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.08E-5	281	313	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MDGLCWNDSV YAQEPLMDSI NCSQYVKPRS DSRWGSELIT PELCSSQLIN LPPLSSFMVD 60 VGPMQPQQQQ RQHVKNSCSI DQSLDCLLSA SNSNNTSTSV EDDGISVLFS DCQTLWSFGG 120 VSSAESENRE VAETVSRVAS DQTKLKSAAK RARADETGSY FRFVGPQDDA FPTETGDFKL 180 IYNENPTKSK KPRSEKPSGS SSISFQQPSS NSTSLSGDTE PDAEAMAQMK QMIYRAAAFR 240 PVNFGLEMAE KPKRKNVRIS TDPQTVAARH RRERISERIR VLQRLVPGGT KMDTASMLDE 300 AANYLKFLRA QVKALENLSP KPDPSPSSSL PLFHPPSLFL PMQNPNHTHD PQS

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MDGLCWNDSV YAQEPLMDSI NCSQYVKPRS DSRWGSELIT PELCSSQLIN LPPLSSFMVD  60
VGPMQPQQQQ RQHVKNSCSI DQSLDCLLSA SNSNNTSTSV EDDGISVLFS DCQTLWSFGG  120
VSSAESENRE VAETVSRVAS DQTKLKSAAK RARADETGSY FRFVGPQDDA FPTETGDFKL  180
IYNENPTKSK KPRSEKPSGS SSISFQQPSS NSTSLSGDTE PDAEAMAQMK QMIYRAAAFR  240
PVNFGLEMAE KPKRKNVRIS TDPQTVAARH RRERISERIR VLQRLVPGGT KMDTASMLDE  300
AANYLKFLRA QVKALENLSP KPDPSPSSSL PLFHPPSLFL PMQNPNHTHD PQS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010528939.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010528939.1	0.0	PREDICTED: transcription factor bHLH87-like
Swissprot	Q8S3D2	1e-132	BH087_ARATH; Transcription factor bHLH87
TrEMBL	D7L0R6	1e-132	D7L0R6_ARALL; Basic helix-loop-helix family protein
STRING	XP_010528939.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7960	26	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	8e-96	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]