PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528506.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 338aa    MW: 37500 Da    PI: 8.1687
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528506.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.21.8e-15265289226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ktelC+ +++tG C+yGd+C+FaHg
  XP_010528506.1 265 KTELCNKWQETGACPYGDNCQFAHG 289
                     9***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.9E-19258296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-11261295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23263291IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-9263290IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-12265289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-12297330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-9297332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.178301329IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-5301328IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEKDASMGSD PTSVTTLNSP PPPLSPQSDK SSHKHQEEFA ANFASLYQSI FSPESQFPSS  60
LSLSPSPPSS SSPAAPADAT TEYRLHQARL ILEYNELNKN YDLCLVRLQS LTTELESLRQ  120
ENAALCLENT ELLRLIHLSN TTTTTSSSST AAAPVSQPHV PNLPNRQQIS DFGRQGGSLE  180
HSRPARRNNV ERTVLPKSIS VRSSGYLRMN QRSHGYGGAG RQANLHRFTS QLGSDSIPQK  240
VCVPTSGKGE KEAVELEVYR QGMLKTELCN KWQETGACPY GDNCQFAHGI DELRPVIRHP  300
RYKTEVCRMI VTGSTCPYGH RCHFRHSLTE QERLLLPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-21265330570Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528506.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528504.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
RefseqXP_010528505.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
RefseqXP_010528506.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ9C9N31e-111C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1J3HSH11e-142A0A1J3HSH1_NOCCA; Zinc finger CCCH domain-containing protein 14 (Fragment)
STRINGXP_010528504.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-106C3H family protein