PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010528397.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C2H2 | ||||||||
Protein Properties | Length: 381aa MW: 42171.3 Da PI: 7.7721 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.4e-05 | 23 | 44 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F ++ +L H r H XP_010528397.1 23 VCNVCGKEFQSPKSLYGHTRIH 44 8*******************99 PP | |||||||
2 | zf-C2H2 | 13.5 | 0.00022 | 50 | 71 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg+ Fs+ L +H+ +H XP_010528397.1 50 PCKVCGEEFSSVKCLINHMVLH 71 6******************988 PP | |||||||
3 | zf-C2H2 | 12.1 | 0.00058 | 236 | 258 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+Fs+ + L H+ +H XP_010528397.1 236 YRCKTCHKVFSSYHALGGHQTLH 258 9***************9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.048 | 22 | 44 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.93E-9 | 22 | 71 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 22 | 44 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.533 | 22 | 49 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.9E-5 | 23 | 46 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 3.4E-4 | 24 | 44 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.018 | 49 | 71 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.619 | 49 | 76 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 51 | 71 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.073 | 51 | 72 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 236 | 258 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 8.83E-7 | 236 | 258 | No hit | No description |
PROSITE profile | PS50157 | 11.884 | 236 | 263 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.9E-7 | 236 | 261 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 238 | 258 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.83E-7 | 305 | 332 | No hit | No description |
SMART | SM00355 | 1.6 | 310 | 332 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.4E-4 | 310 | 335 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 0.0064 | 310 | 335 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.51 | 310 | 337 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 312 | 332 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MTSSDHGLSF CPKKSRNFQS LCVCNVCGKE FQSPKSLYGH TRIHSNRLIP CKVCGEEFSS 60 VKCLINHMVL HRVLVPDEPR ICSIAEKSFE ETKSLNLVMG DGSLMNKSSC VTEIEQEEME 120 EVAMSLIMLS EGLHDLDSSG NVSRGDESVA LEVKSWNSKR VESEEHCSFD SPTLYNNHDK 180 IKPGMDEPLM DSSEVKLKSS GLQTHSGYIK SSSYTMLSSS STSDRSKKKS LKKSGYRCKT 240 CHKVFSSYHA LGGHQTLHRS ERRHCMSKNP NFDGNAFPGQ IVSEVCKTGS QINKDEAAES 300 QENSPGNSGY ICKTCGKFFS CSKSLGGHQA LHRSESRRFM AKNANLRGNS LFGSATSEVG 360 KTGTDTNQHE FDENVTELRN I |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010528397.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010528395.1 | 0.0 | PREDICTED: zinc finger protein 62 homolog | ||||
Refseq | XP_010528396.1 | 0.0 | PREDICTED: zinc finger protein 62 homolog | ||||
Refseq | XP_010528397.1 | 0.0 | PREDICTED: zinc finger protein 62 homolog | ||||
STRING | XP_010528395.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G29340.1 | 3e-12 | C2H2 family protein |