PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528396.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 381aa    MW: 42171.3 Da    PI: 7.7721
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528396.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.4e-052344223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +C+ Cgk F ++ +L  H r H
  XP_010528396.1 23 VCNVCGKEFQSPKSLYGHTRIH 44
                    8*******************99 PP
2zf-C2H213.50.000225071223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +C+ Cg+ Fs+   L +H+ +H
  XP_010528396.1 50 PCKVCGEEFSSVKCLINHMVLH 71
                    6******************988 PP
3zf-C2H212.10.00058236258123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+k+Fs+ + L  H+ +H
  XP_010528396.1 236 YRCKTCHKVFSSYHALGGHQTLH 258
                     9***************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0482244IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.93E-92271No hitNo description
PROSITE patternPS0002802244IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.5332249IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-52346IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.4E-42444IPR007087Zinc finger, C2H2
SMARTSM003550.0184971IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6194976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
PfamPF139120.0735172IPR007087Zinc finger, C2H2
SMARTSM003550.17236258IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.83E-7236258No hitNo description
PROSITE profilePS5015711.884236263IPR007087Zinc finger, C2H2
PfamPF139121.9E-7236261IPR007087Zinc finger, C2H2
PROSITE patternPS000280238258IPR007087Zinc finger, C2H2
SuperFamilySSF576678.83E-7305332No hitNo description
SMARTSM003551.6310332IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4310335IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139120.0064310335IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.51310337IPR007087Zinc finger, C2H2
PROSITE patternPS000280312332IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MTSSDHGLSF CPKKSRNFQS LCVCNVCGKE FQSPKSLYGH TRIHSNRLIP CKVCGEEFSS  60
VKCLINHMVL HRVLVPDEPR ICSIAEKSFE ETKSLNLVMG DGSLMNKSSC VTEIEQEEME  120
EVAMSLIMLS EGLHDLDSSG NVSRGDESVA LEVKSWNSKR VESEEHCSFD SPTLYNNHDK  180
IKPGMDEPLM DSSEVKLKSS GLQTHSGYIK SSSYTMLSSS STSDRSKKKS LKKSGYRCKT  240
CHKVFSSYHA LGGHQTLHRS ERRHCMSKNP NFDGNAFPGQ IVSEVCKTGS QINKDEAAES  300
QENSPGNSGY ICKTCGKFFS CSKSLGGHQA LHRSESRRFM AKNANLRGNS LFGSATSEVG  360
KTGTDTNQHE FDENVTELRN I
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528396.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528395.10.0PREDICTED: zinc finger protein 62 homolog
RefseqXP_010528396.10.0PREDICTED: zinc finger protein 62 homolog
RefseqXP_010528397.10.0PREDICTED: zinc finger protein 62 homolog
STRINGXP_010528395.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.13e-12C2H2 family protein