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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_010528246.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family |
MYB |
Protein Properties |
Length: 380aa MW: 42537.2 Da PI: 8.2433 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_010528246.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 52.3 | 1.3e-16 | 129 | 175 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT++Ed ll ++v+++G + W+ Ia+++ gR +kqc++rw+++l
XP_010528246.1 129 KGQWTPQEDRLLMQLVERHGIKKWSQIAKMLH-GRVGKQCRERWHNHL 175
799*****************************.*************97 PP
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2 | Myb_DNA-binding | 54.6 | 2.6e-17 | 181 | 223 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
+++W++eEd +l++a+ + G++ W+ Iar+++ gRt++ +k++w+
XP_010528246.1 181 KDAWSEEEDRILIQAHMEIGNK-WAEIARRLP-GRTENTIKNHWN 223
689*******************.*********.***********8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010439 | Biological Process | regulation of glucosinolate biosynthetic process |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:1904095 | Biological Process | negative regulation of endosperm development |
GO:2000692 | Biological Process | negative regulation of seed maturation |
GO:0005634 | Cellular Component | nucleus |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 380 aa
Download sequence Send
to blast |
MSINPFPCNF AFEAFLYNVS SNQEFFTMDS TGPGALSEGI SGILHGLPEH VMWDGTLHGQ 60 PEHDQGLTVA EPVLESSMVE SLPLDLVPAV DIRNRCQDQA MKAGQIIKKS KRMMMRRGSK 120 SSKKANIIKG QWTPQEDRLL MQLVERHGIK KWSQIAKMLH GRVGKQCRER WHNHLRPDIK 180 KDAWSEEEDR ILIQAHMEIG NKWAEIARRL PGRTENTIKN HWNATKRRQH SRRTKGKDEN 240 ALVPRSQALQ DYIRSVTDDD PSNAVAAIAA ANASRRVRDK GKRAAVQEQR RDHEMGERYD 300 FGNNCEYLVN GVMGLRLDAG AQMQIPAITS ASGSGSASAS GSGTEFDEQI LDSWMLMYGC 360 DQLMMNEIAL LETLTGGGSA
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1gv2_A | 1e-44 | 127 | 229 | 2 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 7e-44 | 127 | 229 | 56 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 7e-44 | 127 | 229 | 56 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-44 | 127 | 229 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-44 | 127 | 229 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that recognizes the motif 5'-TAACGG-3' in the promoter of endosperm-induced genes (PubMed:27681170, PubMed:25194028, PubMed:19066902). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner but via the expression of embryonic genes (e.g. LEC1, LEC2, FUS3 and WUS) (PubMed:18695688). May play an important role during embryogenesis and seed maturation (PubMed:19066902, PubMed:25194028). Together with MYB115, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). Regulates negatively maturation genes in the endosperm (PubMed:25194028). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:19066902, ECO:0000269|PubMed:25194028, ECO:0000269|PubMed:27681170}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by LEC2. {ECO:0000269|PubMed:25194028}. |