PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Trihelix

Protein Properties

Length: 394aa MW: 45353.5 Da PI: 6.8361

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010528063.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	87.3	1.8e-27	83	164	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++ s++++y+++++ XP_010528063.1 83 WVQDETRSLIAFRREMDSLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSTKISYYKEID 164 ******************************************************************84...4457899997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-4	73	144	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.455	75	139	IPR017877	Myb-like domain
SMART	SM00717	8.5E-5	79	141	IPR001005	SANT/Myb domain
CDD	cd12203	7.06E-30	81	146	No hit	No description
Pfam	PF13837	9.0E-22	82	166	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MFVSDKPRPI DFYKDNDDSS AVAARDMIVE VTANGDLPPH HHHHHHHHHQ LHQAQQQQQQ 60 MILGDSSGED HEVKAPKKRA ETWVQDETRS LIAFRREMDS LFNTSKSNKH LWEQISSKMR 120 EKGFDRSPTM CTDKWRNLLK EFKKAKHQDR GSGSTKISYY KEIDEILRER SKKAAQYKSP 180 TPSSKVDSFM QFTDKGFDDT SISFGSVEAS ARPALNLERR LDHDGHPLAI ATADAVAATA 240 VPTWNWRETP GNAADGQSFG GRVITVKFGE YTRRIGIDGT AEAIKEAIRS AFRLRTRRAF 300 WLEDDEQVVR SLDRDMPLGN YTLHVDEGLA IKVCHYDDSD QLPVHTEEKI FYTEEDYRDF 360 LARRGWSCLR EFDGFRNIDN MDDLQPGALY RGMR

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MFVSDKPRPI DFYKDNDDSS AVAARDMIVE VTANGDLPPH HHHHHHHHHQ LHQAQQQQQQ  60
MILGDSSGED HEVKAPKKRA ETWVQDETRS LIAFRREMDS LFNTSKSNKH LWEQISSKMR  120
EKGFDRSPTM CTDKWRNLLK EFKKAKHQDR GSGSTKISYY KEIDEILRER SKKAAQYKSP  180
TPSSKVDSFM QFTDKGFDDT SISFGSVEAS ARPALNLERR LDHDGHPLAI ATADAVAATA  240
VPTWNWRETP GNAADGQSFG GRVITVKFGE YTRRIGIDGT AEAIKEAIRS AFRLRTRRAF  300
WLEDDEQVVR SLDRDMPLGN YTLHVDEGLA IKVCHYDDSD QLPVHTEEKI FYTEEDYRDF  360
LARRGWSCLR EFDGFRNIDN MDDLQPGALY RGMR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	3e-50	77	162	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010528063.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010528063.1	0.0	PREDICTED: trihelix transcription factor GT-1-like isoform X2
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A067JSB4	0.0	A0A067JSB4_JATCU; Uncharacterized protein
STRING	XP_010528062.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]