PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528045.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family RAV
Protein Properties Length: 364aa    MW: 40545 Da    PI: 9.5153
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528045.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.48.7e-1464112155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  XP_010528045.1  64 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAQRFRG 112
                     89****9888.8*********3.....5**********99*************98 PP
2B3103.31.3e-32201302197
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+ tpsdv+k++rlv+pk++ae+h     g+++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F++++ +++
  XP_010528045.1 201 FEKAVTPSDVGKLNRLVIPKHHAEKHfplpsGNVSVKGVLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDVVSFSRSNGQDQ 295
                     89*****************************99999****************************************************9877888 PP

                     ..EEEEE CS
              B3  91 elvvkvf 97 
                     +l++++ 
  XP_010528045.1 296 QLYIGWK 302
                     8998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-1764120IPR016177DNA-binding domain
CDDcd000182.32E-2664122No hitNo description
PfamPF008472.8E-964112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2065121IPR001471AP2/ERF domain
SMARTSM003802.0E-2965126IPR001471AP2/ERF domain
PROSITE profilePS5103220.45565120IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.0E-41194308IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-32199306IPR015300DNA-binding pseudobarrel domain
CDDcd100176.64E-29200292No hitNo description
PfamPF023621.1E-29201303IPR003340B3 DNA binding domain
SMARTSM010193.2E-25201305IPR003340B3 DNA binding domain
PROSITE profilePS5086314.381201305IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDVSSVDEST TSAETVNTPP MTTPETRPPA RKSPEKLYRM GSGSSVVLDS ENGVEFESRK  60
LPSSKYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEDEAA RAYDVAAQRF RGRDAVTNFK  120
NARLDDDEVA FLNAHSKSEI VDMLRKHTYN EELEQSKRRS RSRYGNSNGN DDRNGNGKSP  180
GTGDGNDGVS GTEFRSAEAL FEKAVTPSDV GKLNRLVIPK HHAEKHFPLP SGNVSVKGVL  240
LNFEDVTGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKNLK AGDVVSFSRS NGQDQQLYIG  300
WKARSDPDSE PGRVVKLFGV NISSTVDCSN DVVARSGGQK RAREVEETML SLGCCKKQRV  360
FVAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-7219730810121DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528045.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528045.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM90.0RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLD7KQD70.0D7KQD7_ARALL; Uncharacterized protein
STRINGXP_010528045.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.10.0related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]