PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010528040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | bHLH | ||||||||
Protein Properties | Length: 325aa MW: 36772.7 Da PI: 5.932 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.7 | 4.9e-14 | 124 | 170 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr++lP+ +K +Ka+ L ++++++k+L XP_010528040.1 124 KSHSEAERRRRERINNHLAKLRSILPNT-----TKTDKASLLAEVIQHMKEL 170 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.895 | 121 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-11 | 124 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-14 | 125 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.16E-15 | 125 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-12 | 127 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.23E-5 | 134 | 173 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 8.2E-5 | 208 | 258 | No hit | No description |
CDD | cd04873 | 4.41E-6 | 208 | 294 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0080147 | Biological Process | root hair cell development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MYAMREEDCF QALHNNIQEY QDQFLLHNNQ HQQILPWTVP SFDLTRSNHD SPPFGYSYFT 60 QRDGFGGSSG PSMNHHQNHL RVLSEALGPI MRPGSDFGRF GFDGEMGKMT AQEIIDAKAL 120 AASKSHSEAE RRRRERINNH LAKLRSILPN TTKTDKASLL AEVIQHMKEL KRQTSLISDT 180 CPVPTEADEL TVDSSYDDGD GNVVIKASFC CQDRTDLMND VINALKELRL KTLKAEITTV 240 GGRVKNVLFI SAEEDPRSYD DDNSNHNYGD DDDDDEQKKY NRVNSIQEAL KAVIEKCVHG 300 DNNFDQSSSG GAKRQRTNSV VNRRY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 134 | ERRRRE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for MONOPTEROS-dependent root initiation in embryo. Transcriptionally controlled by MONOPTEROS. {ECO:0000269|PubMed:20220754}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010528040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010528040.1 | 0.0 | PREDICTED: transcription factor AIG1-like | ||||
Swissprot | Q9LS08 | 1e-137 | BH032_ARATH; Transcription factor AIG1 | ||||
TrEMBL | V4KSD4 | 1e-138 | V4KSD4_EUTSA; Uncharacterized protein | ||||
STRING | XP_010528040.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13949 | 17 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25710.1 | 1e-127 | basic helix-loop-helix 32 |