PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010527942.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 484aa    MW: 52614.2 Da    PI: 8.3058
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010527942.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.71.2e-33231287259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      DgynWrKYGqK+vkgsefprsYY+Ct +gCpvkkkvers  d++++ei+Y+g+Hnh+
  XP_010527942.1 231 TDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSL-DGQATEIIYKGQHNHQ 287
                     7****************************************.***************8 PP
2WRKY106.21.7e-33396454159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+d k+v++tYeg+Hnh+
  XP_010527942.1 396 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERAATDAKAVITTYEGKHNHD 454
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.0E-30221289IPR003657WRKY domain
SuperFamilySSF1182909.29E-26228289IPR003657WRKY domain
SMARTSM007741.6E-37230288IPR003657WRKY domain
PROSITE profilePS5081124.352231289IPR003657WRKY domain
PfamPF031061.4E-25232287IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-36381454IPR003657WRKY domain
SuperFamilySSF1182901.57E-28388455IPR003657WRKY domain
PROSITE profilePS5081136.896391456IPR003657WRKY domain
SMARTSM007745.9E-39396455IPR003657WRKY domain
PfamPF031061.2E-25397454IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MADKKEQPST STPKSSAGAP PRPTITLPPR PFGEVFFNGG IGFSPGPMTL VSNLFPSSNE  60
YKSFSQLLAG AMASPEAASA AAQQRPGSSG DGGGGGGNSS GDMDPRFKQN RPTGLMITQP  120
PTMFTVPPGL SPATLLDSPS FLGLLSPIQG TFGMSHQQAL AQVTAQAVQA NTHLQTQPEY  180
LSMAPPTSFV ELPSVSTAVS DSSLAQKESS ELSISVQEQR SQLVNVDKPA TDGYNWRKYG  240
QKQVKGSEFP RSYYKCTNPG CPVKKKVERS LDGQATEIIY KGQHNHQPPQ NNKRGNRDSS  300
NPNGSSDTAS QFQASSFNKT RRDHEASQAT MTDQISEASD SEEVGNAQTG GEERDEDEPD  360
PKRRSTEIRV SEHAASHRTV TEPRIIVQTN SEVDLLDDGY RWRKYGQKVV KGNPYPRSYY  420
KCTTPGCNVR KHVERAATDA KAVITTYEGK HNHDIQLRLE NLHASANLSH QPIARLRLKE  480
EQSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-41232455877Probable WRKY transcription factor 4
2lex_A2e-41232455877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010527942.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010527942.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI900.0WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLD7KBF40.0D7KBF4_ARALL; WRKY DNA-binding protein 4
TrEMBLV4MU440.0V4MU44_EUTSA; Uncharacterized protein
STRINGXP_010527942.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.10.0WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]